myRT

myRT report for GCA_002972835.1_ASM297283v1

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Seq: JZPQ01000077.1 Escherichia coli strain HT2012166 Scaffold_cov_42.08_scaffold77, whole genome shotgun sequence (630875 bp)
Overview 1 RT 1: 488450-496543 bp Neighborhood of RT #1 [488450, 496543] Arm-DNA-bind_3 RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 488450-489199 bp Feature: domain Description: Arm-DNA-bind_3 Location: 488480-488735 bp Feature: domain Description: Arm-DNA-bind_3 Location: 488480-488735 bp Feature: gene Location: 489462-493319 bp Feature: gene Location: 493542-495080 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 493971-494427 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 493971 -494427 bp Feature: gene Location: 495182-496219 bp Feature: domain Description: HTH_29 Location: 495278-495449 bp Feature: domain Description: HTH_29 Location: 495278-495449 bp Feature: domain Description: HTH_33 Location: 495482-495644 bp Feature: domain Description: HTH_33 Location: 495482-495644 bp Feature: domain Description: DDE_3 Location: 495686-496115 bp Feature: domain Description: DDE_3 Location: 495686-4961 1 5 bp Feature: gene Location: 496253-496543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: JZPQ01000013.1 Escherichia coli strain HT2012166 Scaffold_cov_42.58_scaffold13, whole genome shotgun sequence (11790 bp)
Overview 1 RT 1: 2755-5348 bp Neighborhood of RT #1 [2755, 5348] CdiI_3 RVT-GII RVT-GII GIIM Feature: gene Location: 2755-3141 bp Feature: domain Description: CdiI_3 Location: 2779-3055 bp Feature: domain Description: CdiI_3 Location: 2 779-3055 bp Feature: gene Location: 3287-3481 bp Feature: gene Location: 3589-4071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3910-3997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3910-3997 bp Feature: gene Location: 4110-4880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4113-4527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4113-452 7 bp Feature: domain Description: GIIM Note: maturase Location: 4578-4743 bp Feature: domain Description: GIIM Note: maturase Location: 4578-4743 bp Feature: gene Location: 4932-5060 bp Feature: gene Location: 5130-5348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388)

Seq: JZPQ01000104.1 Escherichia coli strain HT2012166 Scaffold_cov_47.51_scaffold104, whole genome shotgun sequence (15522 bp)
Overview 1 RT 1: 5045-6784 bp Neighborhood of RT #1 [5045, 6843] InsE RVT-GII trans_reg_C Feature: gene Location: 5045-5254 bp Feature: domain Description: InsE Location: 5057-5243 bp Feature: domain Description: InsE Location: 5057-5243 bp Feature: gene Location: 5297-5491 bp Feature: gene Location: 5461-5730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5566-5659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5566-5659 bp Feature: gene Location: 5902-6243 bp Feature: gene Location: 6541-6843 bp Feature: domain Description: trans_reg_C Location: 6589-6784 bp Feature: domain Description: trans_reg_C Location: 6589-6784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, trans_reg_C (cd00383)

Seq: JZPQ01000075.1 Escherichia coli strain HT2012166 Scaffold_cov_57.85_scaffold75, whole genome shotgun sequence (2411 bp)
Overview 1 RT 1: 158-1718 bp Neighborhood of RT #1 [158, 1718] RVT-GII group_II_RT_mat Feature: gene Location: 158-352 bp Feature: gene Location: 446-931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 9-905 bp Feature: gene Location: 928-1260 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1090-1252 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1090-1252 bp Feature: gene Location: 1488-1718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JZPQ01000061.1 Escherichia coli strain HT2012166 Scaffold_cov_63.89_scaffold61, whole genome shotgun sequence (7595 bp)
Overview 1 RT 1: 1-3566 bp Neighborhood of RT #1 [1, 3571] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1-126 bp Feature: gene Location: 384-593 bp Feature: gene Location: 728-2629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995 -1826 bp Feature: domain Description: Intron_maturas2 Location: 1940-2198 bp Feature: domain Description: Intron_maturas2 Location: 1940-2198 bp Feature: domain Description: HNHc Note: nucleases Location: 2372-2534 bp Feature: domain Description: HNHc Note: nucleases Location: 2372-25 34 bp Feature: gene Location: 2824-3276 bp Feature: domain Description: PRK13732 Location: 2830-3274 bp Feature: domain Description: PRK13732 Location: 2830-3274 bp Feature: gene Location: 3338-3571 bp Feature: domain Description: DUF905 Location: 3368-3566 bp Feature: domain Description: DUF905 Location: 3368-35 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JZPQ01000023.1 Escherichia coli strain HT2012166 Scaffold_cov_82.34_scaffold23, whole genome shotgun sequence (11400 bp)
Overview 1 RT 1: 5314-10100 bp Neighborhood of RT #1 [5314, 10100] StbA RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 5314-6276 bp Feature: domain Description: StbA Location: 5317-6265 bp Feature: domain Description: StbA Location: 5317-6 26 5 bp Feature: gene Location: 6263-6715 bp Feature: gene Location: 6945-8645 bp Feature: domain Description: RVT_N Location: 6999-7242 bp Feature: domain Description: RVT_N Location: 6 999-7242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7287-7923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7287-7923 bp Feature: domain Description: GIIM Note: maturase Location: 7974-8208 bp Feature: domain Description: GIIM Note: maturase Location: 7974-8208 bp Feature: domain Description: HNHc Note: nucleases Location: 8439-8589 bp Feature: domain Description: HNHc Note: nucleases Location: 8439-8589 bp Feature: gene Location: 9132-9878 bp Feature: domain Description: PRK13699 Location: 9267-9876 bp Feature: domain Description: PRK136 99 Location: 926 7-9876 bp Feature: gene Location: 9879-10100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)