myRT

myRT report for GCA_002972885.1_ASM297288v1

Download annotations/find similar RTs

Seq: JZPJ01000078.1 Escherichia coli strain HT2012180 Scaffold_cov_26.39_scaffold78, whole genome shotgun sequence (555010 bp)
Overview 1 RT 1: 540616-544526 bp Neighborhood of RT #1 [540616, 544526] YjeJ DUF4156 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 540616-541485 bp Feature: domain Description: YjeJ Location: 540619-541465 bp Feature: domain Description: YjeJ Location: 54061 9-541 465 bp Feature: gene Location: 541535-541888 bp Feature: domain Description: DUF4156 Location: 541604-541880 bp Feature: domain Description: DUF41 56 Location: 541 604-541 880 bp Feature: gene Location: 542147-543814 bp Feature: RT Description: RVT_N Location: 542210-542444 bp Feature: RT Description: RVT_N Location: 54221 0-542444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542498-543143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542498-5431 43 bp Feature: domain Description: GIIM Note: maturase Location: 543197-543428 bp Feature: domain Description: GIIM Note: maturase Location: 5431 97-543428 bp Feature: domain Description: HNHc Note: nucleases Location: 543638-543800 bp Feature: domain Description: HNHc Note: nucleases Location: 543638-543800 bp Feature: gene Location: 543951-544187 bp Feature: gene Location: 544245-544526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjeJ (pfam15922), DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JZPJ01000014.1 Escherichia coli strain HT2012180 Scaffold_cov_27.99_scaffold14, whole genome shotgun sequence (17943 bp)
Overview 1 RT 1: 3-4075 bp Neighborhood of RT #1 [3, 4104] RVT-GII GIIM RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 3-134 bp Feature: gene Location: 233-421 bp Feature: gene Location: 604-1131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610-754 bp Feature: domain Description: GIIM Note: maturase Location: 832-1054 bp Feature: domain Description: GIIM Note: maturase Location: 832 -1054 bp Feature: gene Location: 1132-1836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1333-1831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1333-1831 bp Feature: gene Location: 2298-3737 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2436-2661 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 436-2 661 bp Feature: domain Description: zf-IS66 Location: 2682-2814 bp Feature: domain Description: zf-IS66 Location: 2 682 -2 814 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2859-3696 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 859-3696 bp Feature: gene Location: 3757-4104 bp Feature: domain Description: TnpB_IS66 Location: 3784-4075 bp Feature: domain Description: TnpB_IS66 Location: 3784-4075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), GIIM (pfam08388)