myRT

myRT report for GCA_002972935.1_ASM297293v1

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Seq: JZPA01000038.1 Escherichia coli strain HT2012087 NODE_113_length_23170_cov_23.341864, whole genome shotgun sequence (23254 bp)
Overview 1 RT 1: 5588-10913 bp Neighborhood of RT #1 [5588, 10913] RVT-Retrons Feature: gene Location: 5588-6388 bp Feature: gene Location: 6653-6781 bp Feature: gene Location: 7147-8988 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7282-7981 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7282-7981 bp Feature: gene Location: 9227-10246 bp Feature: gene Location: 10626-10913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JZPA01000001.1 Escherichia coli strain HT2012087 NODE_1_length_24737_cov_48.092815, whole genome shotgun sequence (24821 bp)
Overview 1 RT 1: 6703-9559 bp Neighborhood of RT #1 [6703, 9579] DDE_Tnp_IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C PHA02517 Feature: gene Location: 6703-7185 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6712-7183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6712 -7183 bp Feature: gene Location: 7201-7341 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7207-7300 bp Feature: domain Description: DDE_Tnp_IS66 Location: 72 07-7300 bp Feature: gene Location: 7803-9035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8004-8658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8004-8658 bp Feature: domain Description: GIIM Note: maturase Location: 8736-8958 bp Feature: domain Description: GIIM Note: maturase Location: 8736-8958 bp Feature: gene Location: 9151-9297 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9163-9274 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9163-92 74 bp Feature: gene Location: 9328-9579 bp Feature: domain Description: PHA02517 Location: 9337-9559 bp Feature: domain Description: PHA02 517 Location: 9337-9559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JZPA01000002.1 Escherichia coli strain HT2012087 NODE_2_length_14369_cov_62.288677, whole genome shotgun sequence (14453 bp)
Overview 1 RT 1: 12816-14452 bp Neighborhood of RT #1 [12816, 14452] group_II_RT_mat RVT-GII Feature: gene Location: 12816-13121 bp Feature: gene Location: 13164-13496 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 13326-13488 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 13 3 26-13 488 bp Feature: gene Location: 13493-13978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13496-13952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 496-13 952 bp Feature: gene Location: 14162-14452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JZPA01000029.1 Escherichia coli strain HT2012087 NODE_38_length_7986_cov_37.354244, whole genome shotgun sequence (8070 bp)
Overview 1 RT 1: 4092-7781 bp Neighborhood of RT #1 [4092, 7781] PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4092-4331 bp Feature: gene Location: 4418-4858 bp Feature: domain Description: PRK13732 Location: 4424-4856 bp Feature: domain Description: PRK13732 Location: 4 4 24 -4 856 bp Feature: gene Location: 5053-6954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5320-6151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5320-6151 bp Feature: domain Description: Intron_maturas2 Location: 6265-6523 bp Feature: domain Description: Intron_maturas2 Location: 6265-6523 bp Feature: domain Description: HNHc Note: nucleases Location: 6697-6859 bp Feature: domain Description: HNHc Note: nucleases Location: 6697-6859 bp Feature: gene Location: 7089-7331 bp Feature: gene Location: 7518-7781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZPA01000003.1 Escherichia coli strain HT2012087 NODE_3_length_4780_cov_29.090796, whole genome shotgun sequence (4864 bp)
Overview 1 RT 1: 742-4854 bp Neighborhood of RT #1 [742, 4862] RVT_N RVT-GII GIIM HNHc ArdA Feature: gene Location: 742-1176 bp Feature: gene Location: 1466-1750 bp Feature: gene Location: 2324-3991 bp Feature: RT Description: RVT_N Location: 2372-2609 bp Feature: RT Description: RVT_N Location: 2372-2609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2660-3302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2660-3302 bp Feature: domain Description: GIIM Note: maturase Location: 3353-3587 bp Feature: domain Description: GIIM Note: maturase Location: 335 3-35 87 bp Feature: domain Description: HNHc Note: nucleases Location: 3797-3956 bp Feature: domain Description: HNHc Note: nucleases Location: 3797-395 6 bp Feature: gene Location: 4248-4862 bp Feature: domain Description: ArdA Location: 4377-4854 bp Feature: domain Description: ArdA Location: 4377-485 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ArdA (pfam07275)