myRT

myRT report for GCA_002972955.1_ASM297295v1

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Seq: JZPC01000108.1 Escherichia coli strain HT2012057 WLS-W2919-scaffold108, whole genome shotgun sequence (528487 bp)
Overview 1 RT 1: 205-1944 bp Neighborhood of RT #1 [205, 2003] InsE RVT-GII trans_reg_C Feature: gene Location: 205-414 bp Feature: domain Description: InsE Location: 217-403 bp Feature: domain Description: InsE Location: 21 7-403 bp Feature: gene Location: 597-890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-81 6 bp Feature: gene Location: 1062-1403 bp Feature: gene Location: 1701-2003 bp Feature: domain Description: trans_reg_C Location: 1749-1944 bp Feature: domain Description: trans_reg_C Location: 1 749-1 944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, trans_reg_C (cd00383)

Seq: JZPC01000013.1 Escherichia coli strain HT2012057 WLS-W2919-scaffold13, whole genome shotgun sequence (38637 bp)
Overview 1 RT 1: 31499-34221 bp Neighborhood of RT #1 [31499, 34307] PyrBI_leader RVT-GII GIIM RVT-GII CdiI_3 Feature: gene Location: 31499-31711 bp Feature: domain Description: PyrBI_leader Location: 31583-31709 bp Feature: domain Description: PyrBI_leader Location: 31583-31709 bp Feature: gene Location: 31714-31932 bp Feature: gene Location: 32182-32952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32185-32599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 185-32 599 bp Feature: domain Description: GIIM Note: maturase Location: 32650-32815 bp Feature: domain Description: GIIM Note: maturase Location: 32 650-32 815 bp Feature: gene Location: 32991-33473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33312-33399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33312 -33399 bp Feature: gene Location: 33456-33920 bp Feature: gene Location: 33921-34307 bp Feature: domain Description: CdiI_3 Location: 33945-34221 bp Feature: domain Description: CdiI_3 Location: 33945-342 2 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PyrBI_leader (pfam08052), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616)

Seq: JZPC01000002.1 Escherichia coli strain HT2012057 WLS-W2919-scaffold2, whole genome shotgun sequence (7593 bp)
Overview 1 RT 1: 1-3566 bp Neighborhood of RT #1 [1, 3571] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1-126 bp Feature: gene Location: 384-593 bp Feature: gene Location: 728-2629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 995-1826 bp Feature: domain Description: Intron_maturas2 Location: 1940-2198 bp Feature: domain Description: Intron_maturas2 Location: 1940-2198 bp Feature: domain Description: HNHc Note: nucleases Location: 2372-2534 bp Feature: domain Description: HNHc Note: nucleases Location: 23 72-253 4 bp Feature: gene Location: 2824-3276 bp Feature: domain Description: PRK13732 Location: 2830-3274 bp Feature: domain Description: PRK13 73 2 Location: 283 0-3 274 bp Feature: gene Location: 3338-3571 bp Feature: domain Description: DUF905 Location: 3368-3566 bp Feature: domain Description: DUF905 Location: 3 3 68-3 566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JZPC01000037.1 Escherichia coli strain HT2012057 WLS-W2919-scaffold37, whole genome shotgun sequence (6075 bp)
Overview 1 RT 1: 158-1718 bp Neighborhood of RT #1 [158, 1718] RVT-GII group_II_RT_mat Feature: gene Location: 158-352 bp Feature: gene Location: 446-931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 9-905 bp Feature: gene Location: 928-1260 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1090-1252 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1090-1252 bp Feature: gene Location: 1488-1718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JZPC01000041.1 Escherichia coli strain HT2012057 WLS-W2919-scaffold41, whole genome shotgun sequence (13131 bp)
Overview 1 RT 1: 3254-6751 bp Neighborhood of RT #1 [3254, 6751] PRK13699 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3254-4000 bp Feature: domain Description: PRK13699 Location: 3389-3998 bp Feature: domain Description: PRK13699 Location: 3389-3998 bp Feature: gene Location: 4328-4462 bp Feature: gene Location: 4487-6187 bp Feature: domain Description: RVT_N Location: 4541-4784 bp Feature: domain Description: RVT_N Location: 45 41-4784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4829-5465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4829-5 465 bp Feature: domain Description: GIIM Note: maturase Location: 5516-5750 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 16-5 75 0 bp Feature: domain Description: HNHc Note: nucleases Location: 5981-6131 bp Feature: domain Description: HNHc Note: nucleases Location: 5 981-6131 bp Feature: gene Location: 6270-6476 bp Feature: gene Location: 6503-6751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JZPC01000049.1 Escherichia coli strain HT2012057 WLS-W2919-scaffold49, whole genome shotgun sequence (596326 bp)
Overview 1 RT 1: 99511-106586 bp Neighborhood of RT #1 [99511, 106586] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 99511-99801 bp Feature: gene Location: 99811-100872 bp Feature: domain Description: HTH_29 Location: 99931-100102 bp Feature: domain Description: HTH_29 Location: 99931-100102 bp Feature: domain Description: HTH_33 Location: 100135-100297 bp Feature: domain Description: HTH_33 Location: 100135-100297 bp Feature: domain Description: DDE_3 Location: 100339-100768 bp Feature: domain Description: DDE_3 Location: 100339-10076 8 bp Feature: gene Location: 100974-102512 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101403-101859 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101403-101859 bp Feature: gene Location: 102569-102700 bp Feature: gene Location: 102735-106586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2