myRT

myRT report for GCA_002972975.1_ASM297297v1

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Seq: JZPD01000117.1 Escherichia coli strain HT2012059 WLS-W2920_cov_27.95_scaffold117, whole genome shotgun sequence (596919 bp)
Overview 1 RT 1: 99626-106701 bp Neighborhood of RT #1 [99626, 106701] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 99626-99916 bp Feature: gene Location: 99926-100987 bp Feature: domain Description: HTH_29 Location: 100046-100217 bp Feature: domain Description: HTH_29 Location: 1 00046-1 0021 7 bp Feature: domain Description: HTH_33 Location: 100250-100412 bp Feature: domain Description: HTH_33 Location: 1 00250-1 0041 2 bp Feature: domain Description: DDE_3 Location: 100454-100883 bp Feature: domain Description: DDE_3 Location: 1 00454-1 00883 bp Feature: gene Location: 101089-102627 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101518-101974 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 01 51 8-1 01 974 bp Feature: gene Location: 102684-102815 bp Feature: gene Location: 102850-106701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: JZPD01000053.1 Escherichia coli strain HT2012059 WLS-W2920_cov_33.01_scaffold53, whole genome shotgun sequence (37191 bp)
Overview 1 RT 1: 2775-6143 bp Neighborhood of RT #1 [2775, 6157] CdiI_3 RVT-GII RVT-GII GIIM ArgR Feature: gene Location: 2775-3161 bp Feature: domain Description: CdiI_3 Location: 2799-3075 bp Feature: domain Description: CdiI_3 Location: 2 799-3075 bp Feature: gene Location: 3307-3501 bp Feature: gene Location: 3609-4091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3930-4017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3930-4017 bp Feature: gene Location: 4130-4900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4133-4547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4133-4547 bp Feature: domain Description: GIIM Note: maturase Location: 4598-4763 bp Feature: domain Description: GIIM Note: maturase Location: 4598-4763 bp Feature: gene Location: 5222-5440 bp Feature: gene Location: 5678-6157 bp Feature: domain Description: ArgR Location: 5711-6143 bp Feature: domain Description: ArgR Location: 5711-6143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388), ArgR (COG1438)

Seq: JZPD01000012.1 Escherichia coli strain HT2012059 WLS-W2920_cov_46.32_scaffold12, whole genome shotgun sequence (7633 bp)
Overview 1 RT 1: 3-3586 bp Neighborhood of RT #1 [3, 3591] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3-146 bp Feature: gene Location: 404-613 bp Feature: gene Location: 748-2649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1015-1846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1015-1846 bp Feature: domain Description: Intron_maturas2 Location: 1960-2218 bp Feature: domain Description: Intron_maturas2 Location: 1960-2218 bp Feature: domain Description: HNHc Note: nucleases Location: 2392-2554 bp Feature: domain Description: HNHc Note: nucleases Location: 23 92-2554 bp Feature: gene Location: 2844-3296 bp Feature: domain Description: PRK13732 Location: 2850-3294 bp Feature: domain Description: PRK13 73 2 Location: 2850-3 294 bp Feature: gene Location: 3358-3591 bp Feature: domain Description: DUF905 Location: 3388-3586 bp Feature: domain Description: DUF905 Location: 3 3 88-3 586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JZPD01000027.1 Escherichia coli strain HT2012059 WLS-W2920_cov_52.69_scaffold27, whole genome shotgun sequence (6595 bp)
Overview 1 RT 1: 4968-6592 bp Neighborhood of RT #1 [4968, 6592] group_II_RT_mat RVT-GII Feature: gene Location: 4968-5273 bp Feature: gene Location: 5316-5648 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5478-5640 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 54 78-564 0 bp Feature: gene Location: 5645-6130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5648-6104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564 8-6104 bp Feature: gene Location: 6314-6592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JZPD01000017.1 Escherichia coli strain HT2012059 WLS-W2920_cov_58.49_scaffold17, whole genome shotgun sequence (11428 bp)
Overview 1 RT 1: 5334-10120 bp Neighborhood of RT #1 [5334, 10120] StbA RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 5334-6296 bp Feature: domain Description: StbA Location: 5337-6285 bp Feature: domain Description: StbA Location: 5 337-6285 bp Feature: gene Location: 6283-6735 bp Feature: gene Location: 6965-8665 bp Feature: domain Description: RVT_N Location: 7019-7262 bp Feature: domain Description: RVT_N Location: 7019-7262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7307-7943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7307-7943 bp Feature: domain Description: GIIM Note: maturase Location: 7994-8228 bp Feature: domain Description: GIIM Note: maturase Location: 7994-8228 bp Feature: domain Description: HNHc Note: nucleases Location: 8459-8609 bp Feature: domain Description: HNHc Note: nucleases Location: 845 9-8609 bp Feature: gene Location: 9152-9898 bp Feature: domain Description: PRK13699 Location: 9287-9896 bp Feature: domain Description: PRK13699 Location: 9287-9896 bp Feature: gene Location: 9899-10120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)