myRT

myRT report for GCA_002972995.1_ASM297299v1

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Seq: JZQT01000150.1 Escherichia coli strain HT2012096 scaffold150, whole genome shotgun sequence (3766 bp)
Overview 1 RT 1: 870-3557 bp Neighborhood of RT #1 [870, 3557] TnpB_IS66 RVT_N RVT-GII GIIM Feature: gene Location: 870-1184 bp Feature: domain Description: TnpB_IS66 Location: 897-1137 bp Feature: domain Description: TnpB_IS66 Location: 897-1 1 37 bp Feature: gene Location: 1420-1623 bp Feature: gene Location: 1854-3143 bp Feature: RT Description: RVT_N Location: 1902-2145 bp Feature: RT Description: RVT_N Location: 1 902-21 45 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190-2832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 90-2832 bp Feature: domain Description: GIIM Note: maturase Location: 2883-3036 bp Feature: domain Description: GIIM Note: maturase Location: 2883-3036 bp Feature: gene Location: 3173-3394 bp Feature: gene Location: 3402-3557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: JZQT01000059.1 Escherichia coli strain HT2012096 scaffold59, whole genome shotgun sequence (2662 bp)
Overview 1 RT 1: 270-2420 bp Neighborhood of RT #1 [270, 2515] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 270-479 bp Feature: gene Location: 614-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: Intron_maturas2 Location: 182 6-2 084 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 58-2 42 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZQT01000074.1 Escherichia coli strain HT2012096 scaffold74, whole genome shotgun sequence (10004 bp)
Overview 1 RT 1: 2674-6048 bp Neighborhood of RT #1 [2674, 6194] trans_reg_C RVT-GII InsE LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 2674-2976 bp Feature: domain Description: trans_reg_C Location: 2722-2917 bp Feature: domain Description: trans_reg_C Location: 2722-2917 bp Feature: gene Location: 3274-3615 bp Feature: gene Location: 3787-4056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3892-3976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 892-3 976 bp Feature: gene Location: 4263-4472 bp Feature: domain Description: InsE Location: 4275-4461 bp Feature: domain Description: InsE Location: 4275-4461 bp Feature: gene Location: 4665-6194 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4782-4995 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4782-4995 bp Feature: domain Description: zf-IS66 Location: 5022-5148 bp Feature: domain Description: zf-IS66 Location: 5022-5148 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5193-6048 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5193 -6048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-GII, InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)