myRT

myRT report for GCA_002973015.1_ASM297301v1

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Seq: JZPE01000039.1 Escherichia coli strain HT2012061 WLS-W2921_cov_28.09_scaffold39, whole genome shotgun sequence (194287 bp)
Overview 1 RT 1: 109974-113884 bp Neighborhood of RT #1 [109974, 113884] YjeJ DUF4156 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 109974-110843 bp Feature: domain Description: YjeJ Location: 109977-110823 bp Feature: domain Description: YjeJ Location: 1 09977-1 1 0823 bp Feature: gene Location: 110893-111246 bp Feature: domain Description: DUF4156 Location: 110962-111238 bp Feature: domain Description: DUF41 56 Location: 1 1 0962-1 1 1 238 bp Feature: gene Location: 111505-113172 bp Feature: RT Description: RVT_N Location: 111568-111802 bp Feature: RT Description: RVT_N Location: 1 1 1 568-1 1 1 802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111856-112501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 856-1 1 2501 bp Feature: domain Description: GIIM Note: maturase Location: 112555-112786 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 2555-1 1 2786 bp Feature: domain Description: HNHc Note: nucleases Location: 112996-113158 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 2996-1 1 31 58 bp Feature: gene Location: 113309-113545 bp Feature: gene Location: 113603-113884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjeJ (pfam15922), DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JZPE01000049.1 Escherichia coli strain HT2012061 WLS-W2921_cov_28.13_scaffold49, whole genome shotgun sequence (403358 bp)
Overview 1 RT 1: 384595-389490 bp Neighborhood of RT #1 [384595, 389519] LomR RVT-GII GIIM RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 384595-385338 bp Feature: domain Description: LomR Location: 384607-385336 bp Feature: domain Description: LomR Location: 384607-385336 bp Feature: gene Location: 385648-385836 bp Feature: gene Location: 386019-386546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386025-386169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38602 5-386169 bp Feature: domain Description: GIIM Note: maturase Location: 386247-386469 bp Feature: domain Description: GIIM Note: maturase Location: 3862 47-386469 bp Feature: gene Location: 386547-387251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386748-387246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386748-3872 46 bp Feature: gene Location: 387713-389152 bp Feature: domain Description: LZ_Tnp_IS66 Location: 387851-388076 bp Feature: domain Description: LZ_Tnp_IS66 Location: 387851-388076 bp Feature: domain Description: zf-IS66 Location: 388097-388229 bp Feature: domain Description: zf-IS66 Location: 388097-3882 2 9 bp Feature: domain Description: DDE_Tnp_IS66 Location: 388274-389111 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3882 74-389111 bp Feature: gene Location: 389172-389519 bp Feature: domain Description: TnpB_IS66 Location: 389199-389490 bp Feature: domain Description: TnpB_IS66 Location: 389199-389490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LomR (COG3637), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)