myRT

myRT report for GCA_002973095.1_ASM297309v1

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Seq: JZQM01000013.1 Escherichia coli strain HT2012121 scaffold13, whole genome shotgun sequence (2832 bp)
Overview 1 RT 1: 2-2829 bp Neighborhood of RT #1 [2, 2829] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-136 bp Feature: gene Location: 362-604 bp Feature: gene Location: 739-2640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006-1837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 006-1 837 bp Feature: domain Description: Intron_maturas2 Location: 1951-2209 bp Feature: domain Description: Intron_maturas2 Location: 1 951 -2209 bp Feature: domain Description: HNHc Note: nucleases Location: 2383-2545 bp Feature: domain Description: HNHc Note: nucleases Location: 2383-2545 bp Feature: gene Location: 2680-2829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZQM01000147.1 Escherichia coli strain HT2012121 scaffold147, whole genome shotgun sequence (1687 bp)
Overview 1 RT 1: 1-1630 bp Neighborhood of RT #1 [1, 1630] RVT-GII group_II_RT_mat Feature: gene Location: 1-264 bp Feature: gene Location: 358-843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-817 bp Feature: gene Location: 840-1172 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1002-1164 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1002 -1164 bp Feature: gene Location: 1400-1630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JZQM01000169.1 Escherichia coli strain HT2012121 scaffold169, whole genome shotgun sequence (18987 bp)
Overview 1 RT 1: 13176-16660 bp Neighborhood of RT #1 [13176, 16660] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 13176-13328 bp Feature: gene Location: 13398-14300 bp Feature: domain Description: DUF1281 Location: 13467-13995 bp Feature: domain Description: DUF1281 Location: 13 467-13 995 bp Feature: domain Description: DUF1281_C Location: 14001-14241 bp Feature: domain Description: DUF1281_C Location: 14001-14241 bp Feature: gene Location: 14377-16101 bp Feature: domain Description: RVT_N Location: 14434-14671 bp Feature: domain Description: RVT_N Location: 1443 4-14671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14722-15370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14722-153 70 bp Feature: domain Description: YkfC Location: 15502-15658 bp Feature: domain Description: YkfC Location: 15502-15658 bp Feature: domain Description: HNHc Note: nucleases Location: 15886-16045 bp Feature: domain Description: HNHc Note: nucleases Location: 15886-16045 bp Feature: gene Location: 16142-16282 bp Feature: gene Location: 16364-16660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JZQM01000043.1 Escherichia coli strain HT2012121 scaffold43, whole genome shotgun sequence (4603 bp)
Overview 1 RT 1: 1175-4497 bp Neighborhood of RT #1 [1175, 4517] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C PHA02517 Feature: gene Location: 1175-1360 bp Feature: gene Location: 1641-2123 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1650-2121 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1650-2121 bp Feature: gene Location: 2741-3973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942-3596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294 2-3596 bp Feature: domain Description: GIIM Note: maturase Location: 3674-3896 bp Feature: domain Description: GIIM Note: maturase Location: 3674 -3896 bp Feature: gene Location: 4089-4235 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4101-4212 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4 101-4 212 bp Feature: gene Location: 4266-4517 bp Feature: domain Description: PHA02517 Location: 4275-4497 bp Feature: domain Description: PHA02517 Location: 4 275-4 4 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JZQM01000099.1 Escherichia coli strain HT2012121 scaffold99, whole genome shotgun sequence (3359 bp)
Overview 1 RT 1: 406-3298 bp Neighborhood of RT #1 [406, 3298] DUF1778 Acetyltransf_10 RVT-AbiP2 Feature: gene Location: 406-699 bp Feature: domain Description: DUF1778 Location: 439-673 bp Feature: domain Description: DUF1778 Location: 439-673 bp Feature: gene Location: 683-1198 bp Feature: domain Description: Acetyltransf_10 Location: 941-1121 bp Feature: domain Description: Acetyltransf_10 Location: 941-1121 bp Feature: gene Location: 1572-3110 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2001-2457 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2001-245 7 bp Feature: gene Location: 3167-3298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1778 (pfam08681), Acetyltransf_10 (pfam13673), RVT-AbiP2