myRT

myRT report for GCA_002973205.1_ASM297320v1

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Seq: JZPZ01000033.1 Escherichia coli strain HT2012146 Scaffold_cov_26.72_scaffold33, whole genome shotgun sequence (396789 bp)
Overview 1 RT 1: 289541-297634 bp Neighborhood of RT #1 [289541, 297634] Arm-DNA-bind_3 RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 289541-290290 bp Feature: domain Description: Arm-DNA-bind_3 Location: 289571-289826 bp Feature: domain Description: Arm-DNA-bind_3 Location: 289571 -289826 bp Feature: gene Location: 290553-294410 bp Feature: gene Location: 294633-296171 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 295062-295518 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 295062-29551 8 bp Feature: gene Location: 296273-297310 bp Feature: domain Description: HTH_29 Location: 296369-296540 bp Feature: domain Description: HTH_29 Location: 296369-296540 bp Feature: domain Description: HTH_33 Location: 296573-296735 bp Feature: domain Description: HTH_33 Location: 296573-296735 bp Feature: domain Description: DDE_3 Location: 296777-297206 bp Feature: domain Description: DDE_3 Location: 296777-297206 bp Feature: gene Location: 297344-297634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: JZPZ01000007.1 Escherichia coli strain HT2012146 Scaffold_cov_34.70_scaffold7, whole genome shotgun sequence (8919 bp)
Overview 1 RT 1: 6908-8916 bp Neighborhood of RT #1 [6908, 8916] trans_reg_C RVT-GII InsE Feature: gene Location: 6908-7210 bp Feature: domain Description: trans_reg_C Location: 6956-7151 bp Feature: domain Description: trans_reg_C Location: 6956-7151 bp Feature: gene Location: 7508-7849 bp Feature: gene Location: 8021-8290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8126-8219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812 6-82 19 bp Feature: gene Location: 8497-8706 bp Feature: domain Description: InsE Location: 8509-8695 bp Feature: domain Description: InsE Location: 8509-8695 bp Feature: gene Location: 8752-8916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-GII, InsE (COG2963)

Seq: JZPZ01000050.1 Escherichia coli strain HT2012146 Scaffold_cov_38.48_scaffold50, whole genome shotgun sequence (7615 bp)
Overview 1 RT 1: 2-3576 bp Neighborhood of RT #1 [2, 3581] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 2-136 bp Feature: gene Location: 394-603 bp Feature: gene Location: 738-2639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1005-1836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1005-183 6 bp Feature: domain Description: Intron_maturas2 Location: 1950-2208 bp Feature: domain Description: Intron_maturas2 Location: 1950-2208 bp Feature: domain Description: HNHc Note: nucleases Location: 2382-2544 bp Feature: domain Description: HNHc Note: nucleases Location: 23 82-2544 bp Feature: gene Location: 2834-3286 bp Feature: domain Description: PRK13732 Location: 2840-3284 bp Feature: domain Description: PRK13 73 2 Location: 2840-3 284 bp Feature: gene Location: 3348-3581 bp Feature: domain Description: DUF905 Location: 3378-3576 bp Feature: domain Description: DUF905 Location: 3 3 78-3 576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JZPZ01000005.1 Escherichia coli strain HT2012146 Scaffold_cov_41.57_scaffold5, whole genome shotgun sequence (8283 bp)
Overview 1 RT 1: 6666-8281 bp Neighborhood of RT #1 [6666, 8281] group_II_RT_mat RVT-GII Feature: gene Location: 6666-6971 bp Feature: gene Location: 7014-7346 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7176-7338 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7176-7338 bp Feature: gene Location: 7343-7828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7346-7802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 734 6-7802 bp Feature: gene Location: 7835-7966 bp Feature: gene Location: 8012-8281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: JZPZ01000051.1 Escherichia coli strain HT2012146 Scaffold_cov_78.00_scaffold51, whole genome shotgun sequence (2404 bp)
Overview 1 RT 1: 462-2265 bp Neighborhood of RT #1 [462, 2321] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 462-596 bp Feature: gene Location: 621-2321 bp Feature: domain Description: RVT_N Location: 675-918 bp Feature: domain Description: RVT_N Location: 675 -918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-15 99 bp Feature: domain Description: GIIM Note: maturase Location: 1650-1884 bp Feature: domain Description: GIIM Note: maturase Location: 165 0-1884 bp Feature: domain Description: HNHc Note: nucleases Location: 2115-2265 bp Feature: domain Description: HNHc Note: nucleases Location: 2115 -2265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)