myRT

myRT report for GCA_002973245.1_ASM297324v1

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Seq: JZQA01000105.1 Escherichia coli strain HT2012142 scaffold105, whole genome shotgun sequence (1639 bp)
Overview 1 RT 1: 3-1390 bp Neighborhood of RT #1 [3, 1390] RVT-GII group_II_RT_mat Feature: gene Location: 3-254 bp Feature: gene Location: 348-833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 -807 bp Feature: gene Location: 830-1162 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 992-1154 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 992-1 1 54 bp Feature: gene Location: 1193-1390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JZQA01000109.1 Escherichia coli strain HT2012142 scaffold109, whole genome shotgun sequence (6899 bp)
Overview 1 RT 1: 3359-6896 bp Neighborhood of RT #1 [3359, 6896] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3359-3592 bp Feature: domain Description: DUF905 Location: 3389-3587 bp Feature: domain Description: DUF905 Location: 3389-3587 bp Feature: gene Location: 3654-4106 bp Feature: domain Description: PRK13732 Location: 3660-4104 bp Feature: domain Description: PRK13732 Location: 3660-4104 bp Feature: gene Location: 4301-6202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4568-5399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4568-5399 bp Feature: domain Description: Intron_maturas2 Location: 5513-5771 bp Feature: domain Description: Intron_maturas2 Location: 5513-5771 bp Feature: domain Description: HNHc Note: nucleases Location: 5945-6107 bp Feature: domain Description: HNHc Note: nucleases Location: 5945-6107 bp Feature: gene Location: 6765-6896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZQA01000013.1 Escherichia coli strain HT2012142 scaffold13, whole genome shotgun sequence (7592 bp)
Overview 1 RT 1: 5621-7408 bp Neighborhood of RT #1 [5621, 7419] trans_reg_C RVT-GII InsE Feature: gene Location: 5621-5923 bp Feature: domain Description: trans_reg_C Location: 5669-5864 bp Feature: domain Description: trans_reg_C Location: 5669-5864 bp Feature: gene Location: 6221-6562 bp Feature: gene Location: 6734-7003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6839-6932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683 9-693 2 bp Feature: gene Location: 7210-7419 bp Feature: domain Description: InsE Location: 7222-7408 bp Feature: domain Description: InsE Location: 7222-7408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-GII, InsE (COG2963)

Seq: JZQA01000074.1 Escherichia coli strain HT2012142 scaffold74, whole genome shotgun sequence (2404 bp)
Overview 1 RT 1: 84-1728 bp Neighborhood of RT #1 [84, 1784] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 84-1784 bp Feature: domain Description: RVT_N Location: 138-381 bp Feature: domain Description: RVT_N Location: 138-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 26-1062 bp Feature: domain Description: GIIM Note: maturase Location: 1113-1347 bp Feature: domain Description: GIIM Note: maturase Location: 1113-134 7 bp Feature: domain Description: HNHc Note: nucleases Location: 1578-1728 bp Feature: domain Description: HNHc Note: nucleases Location: 1578-1728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JZQA01000080.1 Escherichia coli strain HT2012142 scaffold80, whole genome shotgun sequence (7931 bp)
Overview 1 RT 1: 2-6657 bp Neighborhood of RT #1 [2, 6657] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 2-943 bp Feature: domain Description: HTH_29 Location: 5-173 bp Feature: domain Description: HTH_29 Location: 5 -173 bp Feature: domain Description: HTH_33 Location: 206-368 bp Feature: domain Description: HTH_33 Location: 206-368 bp Feature: domain Description: DDE_3 Location: 410-839 bp Feature: domain Description: DDE_3 Location: 410-839 bp Feature: gene Location: 1045-2583 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1474-1930 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1474-1930 bp Feature: gene Location: 2640-2771 bp Feature: gene Location: 2806-6657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2