myRT

myRT report for GCA_002973315.1_ASM297331v1

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Seq: JZPU01000157.1 Escherichia coli strain HT2012159 scaffold157, whole genome shotgun sequence (1639 bp)
Overview 1 RT 1: 3-1154 bp Neighborhood of RT #1 [3, 1162] RVT-GII group_II_RT_mat Feature: gene Location: 3-254 bp Feature: gene Location: 348-833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 -807 bp Feature: gene Location: 830-1162 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 992-1154 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 992-1 1 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JZPU01000203.1 Escherichia coli strain HT2012159 scaffold203, whole genome shotgun sequence (2197 bp)
Overview 1 RT 1: 176-1915 bp Neighborhood of RT #1 [176, 1974] InsE RVT-GII trans_reg_C Feature: gene Location: 176-385 bp Feature: domain Description: InsE Location: 188-374 bp Feature: domain Description: InsE Location: 188-374 bp Feature: gene Location: 428-622 bp Feature: gene Location: 592-861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-781 bp Feature: gene Location: 1033-1374 bp Feature: gene Location: 1672-1974 bp Feature: domain Description: trans_reg_C Location: 1720-1915 bp Feature: domain Description: trans_reg_C Location: 172 0-1915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), InsE (COG2963), RVT-GII

Seq: JZPU01000022.1 Escherichia coli strain HT2012159 scaffold22, whole genome shotgun sequence (7502 bp)
Overview 1 RT 1: 3962-7499 bp Neighborhood of RT #1 [3962, 7499] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3962-4195 bp Feature: domain Description: DUF905 Location: 3992-4190 bp Feature: domain Description: DUF905 Location: 3 992-4190 bp Feature: gene Location: 4257-4709 bp Feature: domain Description: PRK13732 Location: 4263-4707 bp Feature: domain Description: PRK13 73 2 Location: 4263 -4707 bp Feature: gene Location: 4904-6805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5171-6002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5171-6002 bp Feature: domain Description: Intron_maturas2 Location: 6116-6374 bp Feature: domain Description: Intron_maturas2 Location: 6116-63 74 bp Feature: domain Description: HNHc Note: nucleases Location: 6548-6710 bp Feature: domain Description: HNHc Note: nucleases Location: 6548-6710 bp Feature: gene Location: 7368-7499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JZPU01000071.1 Escherichia coli strain HT2012159 scaffold71, whole genome shotgun sequence (24578 bp)
Overview 1 RT 1: 3216-7401 bp Neighborhood of RT #1 [3216, 7424] HTH_XRE RVT-Retrons PRK13889 TraD Feature: gene Location: 3216-3431 bp Feature: gene Location: 3522-3803 bp Feature: domain Description: HTH_XRE Location: 3537-3702 bp Feature: domain Description: HTH_XRE Location: 3537-3702 bp Feature: gene Location: 3796-4896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3937-4489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3937-4 4 89 bp Feature: gene Location: 4968-6473 bp Feature: domain Description: PRK13889 Location: 4971-5571 bp Feature: domain Description: PRK13889 Location: 4 971-5571 bp Feature: gene Location: 7119-7424 bp Feature: domain Description: TraD Location: 7227-7401 bp Feature: domain Description: TraD Location: 7227-74 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412)