myRT

myRT report for GCA_002976305.1_ASM297630v1

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Seq: PRDQ01000001.1 Staphylococcus pseudintermedius strain MRSP 424, whole genome shotgun sequence (323365 bp)
Overview 1 RT 1: 1208-4757 bp 2 RT 2: 150600-157975 bp Neighborhood of RT #1 [1208, 4757] XtmA group_II_RT_mat RVT-GII Neighborhood of RT #2 [150600, 157975] met_A_Alw26 Eco57I TaqI_C RVT-UG2 YeiB Feature: gene Location: 1208-1675 bp Feature: domain Description: XtmA Location: 1217-1649 bp Feature: domain Description: XtmA Location: 1 21 7-1 649 bp Feature: gene Location: 1768-2322 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1774-2119 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 774-21 1 9 bp Feature: gene Location: 2475-3059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2700-3033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2700-3033 bp Feature: gene Location: 3602-4237 bp Feature: gene Location: 4260-4757 bp Feature: gene Location: 150600-153908 bp Feature: domain Description: met_A_Alw26 Location: 151878-151995 bp Feature: domain Description: met_A_Alw26 Location: 1 51 878-1 51 995 bp Feature: domain Description: Eco57I Location: 152727-153048 bp Feature: domain Description: Eco57I Location: 1 52727-1 53048 bp Feature: domain Description: TaqI_C Location: 153366-153720 bp Feature: domain Description: TaqI_C Location: 1 53366-1 53720 bp Feature: gene Location: 154281-154547 bp Feature: gene Location: 154507-155823 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 154687-155503 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 54687-1 55503 bp Feature: gene Location: 156408-157625 bp Feature: domain Description: YeiB Location: 156444-157611 bp Feature: domain Description: YeiB Location: 1 56444-1 5761 1 bp Feature: gene Location: 157790-157975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XtmA (COG3728), group_II_RT_mat (TIGR04416), RVT-GII, met_A_Alw26 (TIGR02987), Eco57I (pfam07669), TaqI_C (pfam12950), RVT-UG2, YeiB (COG2311)

Seq: PRDQ01000022.1 Staphylococcus pseudintermedius strain MRSP 424, whole genome shotgun sequence (131271 bp)
Overview 1 RT 1: 232-3309 bp Neighborhood of RT #1 [232, 3344] RVT-GII eMpr PRK06526 Feature: gene Location: 232-462 bp Feature: gene Location: 831-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056-1671 bp Feature: gene Location: 1842-2672 bp Feature: domain Description: eMpr Location: 2013-2538 bp Feature: domain Description: eMpr Location: 2 013-2 538 bp Feature: gene Location: 3012-3344 bp Feature: domain Description: PRK06526 Location: 3027-3309 bp Feature: domain Description: PRK0652 6 Location: 302 7-3309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, eMpr (COG3591), PRK06526 (transposase; Provisional)

Seq: PRDQ01000034.1 Staphylococcus pseudintermedius strain MRSP 424, whole genome shotgun sequence (70177 bp)
Overview 1 RT 1: 29835-34113 bp Neighborhood of RT #1 [29835, 34113] ABCF_EF-3 RVT-GII GIIM Feature: gene Location: 29835-30299 bp Feature: domain Description: ABCF_EF-3 Location: 29841-30285 bp Feature: domain Description: ABCF_EF-3 Location: 29841-3 0285 bp Feature: gene Location: 30383-30550 bp Feature: gene Location: 31471-32823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31696-32308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1696-3 23 08 bp Feature: domain Description: GIIM Note: maturase Location: 32371-32602 bp Feature: domain Description: GIIM Note: maturase Location: 3 23 71-3 2602 bp Feature: gene Location: 32925-33083 bp Feature: gene Location: 33391-34113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABCF_EF-3 (cd03221), RVT-GII, GIIM (pfam08388)