myRT

myRT report for GCA_002981275.1_ASM298127v1

Download annotations/find similar RTs

Seq: PVGG01000162.1 Burkholderia cenocepacia strain AU19684 AU19684_NODE_13.ctg_1, whole genome shotgun sequence (104388 bp)
Overview 1 RT 1: 11217-16710 bp Neighborhood of RT #1 [11217, 16733] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 11217-12134 bp Feature: domain Description: his_ut_repres Location: 11457-12129 bp Feature: domain Description: his_ut_repres Location: 1 1 457-1 21 29 bp Feature: gene Location: 12453-12941 bp Feature: domain Description: FIN Location: 12555-12906 bp Feature: domain Description: FIN Location: 1 2555-1 2906 bp Feature: gene Location: 13195-14544 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13660-14296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3660-1 4296 bp Feature: gene Location: 14849-15199 bp Feature: domain Description: Histone_HNS Location: 14891-15128 bp Feature: domain Description: Histone_HNS Location: 1 4891 -1 51 28 bp Feature: gene Location: 15498-16733 bp Feature: domain Description: MFS_MucK Location: 15576-16710 bp Feature: domain Description: MFS_MucK Location: 1 5576-1 671 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: PVGG01000230.1 Burkholderia cenocepacia strain AU19684 AU19684_NODE_132.ctg_1, whole genome shotgun sequence (15891 bp)
Overview 1 RT 1: 226-8384 bp Neighborhood of RT #1 [226, 8386] YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 226-627 bp Feature: gene Location: 620-2341 bp Feature: domain Description: YjgR Location: 1103-1367 bp Feature: domain Description: YjgR Location: 1103-1367 bp Feature: domain Description: YjgR Location: 1862-2264 bp Feature: domain Description: YjgR Location: 1862 -2 2 64 bp Feature: gene Location: 2436-4187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2571-3213 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 571-32 13 bp Feature: gene Location: 4613-7198 bp Feature: domain Description: gyrB Location: 4754-7196 bp Feature: domain Description: gyrB Location: 4754-7196 bp Feature: gene Location: 7280-8386 bp Feature: domain Description: PRK05643 Location: 7292-8384 bp Feature: domain Description: PRK05643 Location: 72 92 -8384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, gyrB (TIGR01059), YjgR (COG0433)

Seq: PVGG01000017.1 Burkholderia cenocepacia strain AU19684 AU19684_NODE_226.ctg_1, whole genome shotgun sequence (1588 bp)
Overview 1 RT 1: 410-1586 bp Neighborhood of RT #1 [410, 1585] RVT-GII GIIM Feature: gene Location: 410-1585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743-1361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743 -13 61 bp Feature: domain Description: GIIM Note: maturase Location: 1412-1586 bp Feature: domain Description: GIIM Note: maturase Location: 1412-1586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PVGG01000021.1 Burkholderia cenocepacia strain AU19684 AU19684_NODE_243.ctg_1, whole genome shotgun sequence (1086 bp)
Overview 1 RT 1: 2-1071 bp Neighborhood of RT #1 [2, 1085] RVT-GII GIIM IS285 Feature: gene Location: 2-829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-4 4 0 bp Feature: domain Description: GIIM Note: maturase Location: 500-701 bp Feature: domain Description: GIIM Note: maturase Location: 500-701 bp Feature: gene Location: 846-1085 bp Feature: domain Description: IS285 Location: 849-1071 bp Feature: domain Description: IS285 Location: 84 9-1071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IS285 (COG3328)

Seq: PVGG01000074.1 Burkholderia cenocepacia strain AU19684 AU19684_NODE_250.ctg_1, whole genome shotgun sequence (991 bp)
Overview 1 RT 1: 2-991 bp Neighborhood of RT #1 [2, 990] RVT-GII Feature: gene Location: 2-154 bp Feature: gene Location: 484-990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII