myRT

myRT report for GCA_002981575.1_ASM298157v1

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Seq: PVHK01000188.1 Burkholderia vietnamiensis strain AU3578 AU3578_NODE_12.ctg_1, whole genome shotgun sequence (96002 bp)
Overview 1 RT 1: 49663-55719 bp Neighborhood of RT #1 [49663, 55775] ilvH PRK05479 RVT-GII GIIM HNHc PRK05305 PssA Feature: gene Location: 49663-50154 bp Feature: domain Description: ilvH Location: 49666-50143 bp Feature: domain Description: ilvH Location: 49666-501 43 bp Feature: gene Location: 50260-51276 bp Feature: domain Description: PRK05479 Location: 50263-51244 bp Feature: domain Description: PRK05479 Location: 50263-51 244 bp Feature: gene Location: 52815-54125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52818-53406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5281 8-53406 bp Feature: domain Description: GIIM Note: maturase Location: 53457-53691 bp Feature: domain Description: GIIM Note: maturase Location: 53457-53691 bp Feature: domain Description: HNHc Note: nucleases Location: 53922-54075 bp Feature: domain Description: HNHc Note: nucleases Location: 53922-54075 bp Feature: gene Location: 54243-54887 bp Feature: domain Description: PRK05305 Location: 54267-54879 bp Feature: domain Description: PRK05305 Location: 54267-54879 bp Feature: gene Location: 54903-55775 bp Feature: domain Description: PssA Location: 55041-55719 bp Feature: domain Description: PssA Location: 55041 -5571 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183)

Seq: PVHK01000247.1 Burkholderia vietnamiensis strain AU3578 AU3578_NODE_121.ctg_1, whole genome shotgun sequence (16179 bp)
Overview 1 RT 1: 2-3343 bp Neighborhood of RT #1 [2, 3343] COG4715 COG4715 COG4715 RVT-Retrons Feature: gene Location: 2-316 bp Feature: gene Location: 319-2094 bp Feature: domain Description: COG4715 Location: 355-757 bp Feature: domain Description: COG4715 Location: 355-757 bp Feature: domain Description: COG4715 Location: 1306-1681 bp Feature: domain Description: COG4715 Location: 1306-1681 bp Feature: domain Description: COG4715 Location: 1852-2080 bp Feature: domain Description: COG4715 Location: 1852 -2 080 bp Feature: gene Location: 2147-2629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2264-2396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 64-2 396 bp Feature: gene Location: 2730-2885 bp Feature: gene Location: 3041-3343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4715 (Uncharacterized conserved protein, contains Zn finger domain ), RVT-Retrons

Seq: PVHK01000243.1 Burkholderia vietnamiensis strain AU3578 AU3578_NODE_160.ctg_1, whole genome shotgun sequence (6022 bp)
Overview 1 RT 1: 90-2899 bp Neighborhood of RT #1 [90, 2899] RVT-GII IS5 Feature: gene Location: 90-1040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-879 bp Feature: gene Location: 1596-2165 bp Feature: domain Description: IS5 Location: 1794-2124 bp Feature: domain Description: IS5 Location: 1794-2124 bp Feature: gene Location: 2516-2899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS5 (COG3039)

Seq: PVHK01000053.1 Burkholderia vietnamiensis strain AU3578 AU3578_NODE_205.ctg_1, whole genome shotgun sequence (1845 bp)
Overview 1 RT 1: 92-1844 bp Neighborhood of RT #1 [92, 1844] RVT-GII GIIM Feature: gene Location: 92-1462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 28-104 0 bp Feature: domain Description: GIIM Note: maturase Location: 1100-1304 bp Feature: domain Description: GIIM Note: maturase Location: 1100-1304 bp Feature: gene Location: 1695-1844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PVHK01000135.1 Burkholderia vietnamiensis strain AU3578 AU3578_NODE_50.ctg_1, whole genome shotgun sequence (48230 bp)
Overview 1 RT 1: 35716-43491 bp Neighborhood of RT #1 [35716, 43568] COG4938 COG4938 PinE RVT-UG7 VgrG DUF2345 Feature: gene Location: 35716-37038 bp Feature: domain Description: COG4938 Location: 35791-35902 bp Feature: domain Description: COG4938 Location: 35 791-35 902 bp Feature: domain Description: COG4938 Location: 36571-37009 bp Feature: domain Description: COG4938 Location: 365 71-37009 bp Feature: gene Location: 37252-37860 bp Feature: domain Description: PinE Location: 37294-37852 bp Feature: domain Description: PinE Location: 37294-3785 2 bp Feature: gene Location: 38274-39914 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 38691-39111 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 38691-39111 bp Feature: gene Location: 39895-40629 bp Feature: gene Location: 41049-43568 bp Feature: domain Description: VgrG Location: 41097-42924 bp Feature: domain Description: VgrG Location: 41097-42924 bp Feature: domain Description: DUF2345 Location: 43053-43491 bp Feature: domain Description: DUF2345 Location: 4305 3-43491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4938 (Predicted ATPase ), PinE (COG1961), RVT-UG7, VgrG (COG3501), DUF2345 (pfam10106)