myRT

myRT report for GCA_002981785.1_ASM298178v1

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Seq: PVGV01000013.1 Burkholderia cenocepacia strain AU24362 AU24362_NODE_15.ctg_1, whole genome shotgun sequence (147225 bp)
Overview 1 RT 1: 123683-129194 bp Neighborhood of RT #1 [123683, 129199] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 123683-124930 bp Feature: domain Description: MFS_MucK Location: 123773-124907 bp Feature: domain Description: MFS_MucK Location: 1 23773-1 24907 bp Feature: gene Location: 125217-125546 bp Feature: domain Description: Histone_HNS Location: 125238-125475 bp Feature: domain Description: Histone_HNS Location: 1 25238-1 25475 bp Feature: gene Location: 125872-127332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126448-127084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 26448-1 27084 bp Feature: gene Location: 127475-127963 bp Feature: domain Description: FIN Location: 127577-127928 bp Feature: domain Description: FIN Location: 1 27577-1 27928 bp Feature: gene Location: 128282-129199 bp Feature: domain Description: his_ut_repres Location: 128522-129194 bp Feature: domain Description: his_ut_repres Location: 1 28522-1 291 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: PVGV01000052.1 Burkholderia cenocepacia strain AU24362 AU24362_NODE_19.ctg_1, whole genome shotgun sequence (124501 bp)
Overview 1 RT 1: 220-3555 bp Neighborhood of RT #1 [220, 3560] RVT-GII GIIM RutF PRK09121 Feature: gene Location: 220-1545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481-1099 bp Feature: domain Description: GIIM Note: maturase Location: 1150-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1150-1360 bp Feature: gene Location: 1882-2430 bp Feature: domain Description: RutF Location: 1948-2410 bp Feature: domain Description: RutF Location: 1948-2 410 bp Feature: gene Location: 2532-3560 bp Feature: domain Description: PRK09121 Location: 2544-3555 bp Feature: domain Description: PRK0912 1 Location: 2 544-3555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RutF (TIGR03615), RVT-GII, GIIM (pfam08388), PRK09121 (methionine synthase)

Seq: PVGV01000018.1 Burkholderia cenocepacia strain AU24362 AU24362_NODE_70.ctg_1, whole genome shotgun sequence (17099 bp)
Overview 1 RT 1: 13461-16710 bp Neighborhood of RT #1 [13461, 16868] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 13461-14507 bp Feature: domain Description: Gmd Location: 13476-14493 bp Feature: domain Description: Gmd Location: 13 476-14493 bp Feature: gene Location: 14569-15459 bp Feature: domain Description: GDP_MD_SDR_e Location: 14572-15427 bp Feature: domain Description: GDP_MD_SDR_e Location: 14572-15427 bp Feature: gene Location: 15579-16868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15834-16449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583 4-16449 bp Feature: domain Description: GIIM Note: maturase Location: 16509-16710 bp Feature: domain Description: GIIM Note: maturase Location: 16509-16710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: PVGV01000087.1 Burkholderia cenocepacia strain AU24362 AU24362_NODE_84.ctg_1, whole genome shotgun sequence (1865 bp)
Overview 1 RT 1: 79-1192 bp Neighborhood of RT #1 [79, 1368] RVT-GII GIIM Feature: gene Location: 79-1368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-937 bp Feature: domain Description: GIIM Note: maturase Location: 988-1192 bp Feature: domain Description: GIIM Note: maturase Location: 988-1192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)