myRT

myRT report for GCA_002991645.1_ASM299164v1

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Seq: PQIJ01000108.1 Escherichia coli strain SC436 Scaffold108_1, whole genome shotgun sequence (959 bp)
Overview 1 RT 1: 3-357 bp Neighborhood of RT #1 [3, 359] RVT-GII Feature: gene Location: 3-359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PQIJ01000127.1 Escherichia coli strain SC436 Scaffold127_1, whole genome shotgun sequence (591 bp)
Overview 1 RT 1: 1-577 bp Neighborhood of RT #1 [1, 588] RVT-GII Feature: gene Location: 1-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PQIJ01000001.1 Escherichia coli strain SC436 Scaffold1_1, whole genome shotgun sequence (321228 bp)
Overview 1 RT 1: 235680-243490 bp Neighborhood of RT #1 [235680, 243495] Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 235680-237956 bp Feature: domain Description: Phage_GPA Location: 236079-237066 bp Feature: domain Description: Phage_GPA Location: 23 6079-23 7066 bp Feature: gene Location: 238018-238278 bp Feature: gene Location: 238444-239988 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 238861-239314 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23 8861-23 93 14 bp Feature: gene Location: 240331-240471 bp Feature: gene Location: 240539-241729 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 240689-241271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 240689-241271 bp Feature: gene Location: 241726-242433 bp Feature: gene Location: 242476-243495 bp Feature: domain Description: Q Location: 242479-243490 bp Feature: domain Description: Q Location: 242479-243 490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)

Seq: PQIJ01000003.1 Escherichia coli strain SC436 Scaffold3_1, whole genome shotgun sequence (304111 bp)
Overview 1 RT 1: 36272-45348 bp Neighborhood of RT #1 [36272, 45350] Ail_Lom phage_tail_N Peptidase_S74 APC_N_CC RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 36272-36871 bp Feature: domain Description: Ail_Lom Location: 36275-36869 bp Feature: domain Description: Ail_Lom Location: 36275-36869 bp Feature: gene Location: 36936-40694 bp Feature: domain Description: phage_tail_N Location: 36939-37338 bp Feature: domain Description: phage_tail_N Location: 36939-37338 bp Feature: domain Description: Peptidase_S74 Location: 40263-40410 bp Feature: domain Description: Peptidase_S74 Location: 4 0263-4 04 10 bp Feature: domain Description: APC_N_CC Location: 40563-40686 bp Feature: domain Description: APC_N_CC Location: 4 0563-4 0686 bp Feature: gene Location: 41322-42926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41613-42204 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 1613-4 2204 bp Feature: domain Description: TIR_2 Location: 42531-42864 bp Feature: domain Description: TIR_2 Location: 4 2531-4 2864 bp Feature: gene Location: 43284-43544 bp Feature: domain Description: PRK10597 Location: 43287-43527 bp Feature: domain Description: PRK10597 Location: 4 3287-4 3527 bp Feature: gene Location: 43764-45350 bp Feature: domain Description: prfC Location: 43782-45348 bp Feature: domain Description: prfC Location: 4 3782-4 534 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: PQIJ01000070.1 Escherichia coli strain SC436 Scaffold70_1, whole genome shotgun sequence (8826 bp)
Overview 1 RT 1: 5106-7995 bp Neighborhood of RT #1 [5106, 7995] RVT-GII GIIM RVT-GII Feature: gene Location: 5106-5324 bp Feature: gene Location: 5367-5537 bp Feature: gene Location: 5700-6353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5703-6111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 703-6111 bp Feature: domain Description: GIIM Note: maturase Location: 6159-6351 bp Feature: domain Description: GIIM Note: maturase Location: 615 9-635 1 bp Feature: gene Location: 6326-6760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6518-6734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65 18-6734 bp Feature: gene Location: 6929-7126 bp Feature: gene Location: 7669-7995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)