myRT

myRT report for GCA_002993515.1_ASM299351v1

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Seq: PVOC01000060.1 Escherichia coli strain KG-11 NODE_27_length_45430_cov_9.26197_ID_53, whole genome shotgun sequence (45430 bp)
Overview 1 RT 1: 35863-39453 bp Neighborhood of RT #1 [35863, 39453] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 35863-36285 bp Feature: domain Description: DUF1380 Location: 35866-36160 bp Feature: domain Description: DUF1 380 Location: 35866-361 60 bp Feature: gene Location: 36337-36639 bp Feature: gene Location: 36752-38419 bp Feature: domain Description: RVT_N Location: 36800-37037 bp Feature: domain Description: RVT_N Location: 36800-37037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37088-37730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37088-37730 bp Feature: domain Description: GIIM Note: maturase Location: 37781-38015 bp Feature: domain Description: GIIM Note: maturase Location: 37781 -3801 5 bp Feature: domain Description: HNHc Note: nucleases Location: 38225-38384 bp Feature: domain Description: HNHc Note: nucleases Location: 38225-38384 bp Feature: gene Location: 38699-38881 bp Feature: gene Location: 39133-39453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PVOC01000059.1 Escherichia coli strain KG-11 NODE_41_length_12894_cov_10.5575_ID_81, whole genome shotgun sequence (12894 bp)
Overview 1 RT 1: 9142-12819 bp Neighborhood of RT #1 [9142, 12872] COG4453 PHA02517 RVT-GII GIIM InsE Feature: gene Location: 9142-9411 bp Feature: domain Description: COG4453 Location: 9148-9403 bp Feature: domain Description: COG4453 Location: 9148-9403 bp Feature: gene Location: 9626-10081 bp Feature: domain Description: PHA02517 Location: 9629-10037 bp Feature: domain Description: PHA02 517 Location: 962 9-10037 bp Feature: gene Location: 10204-11727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10477-11209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10477-112 09 bp Feature: domain Description: GIIM Note: maturase Location: 11284-11482 bp Feature: domain Description: GIIM Note: maturase Location: 112 84-11482 bp Feature: gene Location: 12021-12392 bp Feature: gene Location: 12513-12872 bp Feature: domain Description: InsE Location: 12516-12819 bp Feature: domain Description: InsE Location: 12 516-12 819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4453 (Uncharacterized conserved protein, DUF1778 family ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: PVOC01000044.1 Escherichia coli strain KG-11 NODE_4_length_329262_cov_8.36101_ID_7, whole genome shotgun sequence (329262 bp)
Overview 1 RT 1: 251798-256018 bp Neighborhood of RT #1 [251798, 256018] RVT-UG7 PRK09692 Feature: gene Location: 251798-251938 bp Feature: gene Location: 252048-252788 bp Feature: gene Location: 252785-254413 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 253193-253622 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 253 193 -253 622 bp Feature: gene Location: 254406-255590 bp Feature: domain Description: PRK09692 Location: 254412-255567 bp Feature: domain Description: PRK09692 Location: 254412-255567 bp Feature: gene Location: 255866-256018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional)