myRT

myRT report for GCA_002993545.1_ASM299354v1

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Seq: PVOF01000045.1 Escherichia coli strain KG-14 NODE_67_length_7551_cov_7.22522_ID_133, whole genome shotgun sequence (7551 bp)
Overview 1 RT 1: 114-5169 bp Neighborhood of RT #1 [114, 5174] RVT-UG4 AfaD-like PRK15223 Feature: gene Location: 114-338 bp Feature: gene Location: 574-1089 bp Feature: gene Location: 1211-1930 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1544-1925 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 544-1 925 bp Feature: gene Location: 2092-2544 bp Feature: domain Description: AfaD-like Location: 2179-2524 bp Feature: domain Description: AfaD-like Location: 21 79-2524 bp Feature: gene Location: 2559-5174 bp Feature: domain Description: PRK15223 Location: 2637-5169 bp Feature: domain Description: PRK1 5223 Location: 2637-51 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, AfaD-like (cd18776), PRK15223 (fimbrial biogenesis outer membrane usher protein)

Seq: PVOF01000097.1 Escherichia coli strain KG-14 NODE_75_length_4192_cov_8.19016_ID_149, whole genome shotgun sequence (4192 bp)
Overview 1 RT 1: 96-4060 bp Neighborhood of RT #1 [96, 4060] PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 96-332 bp Feature: gene Location: 619-987 bp Feature: domain Description: PRK13732 Location: 727-913 bp Feature: domain Description: PRK13732 Location: 72 7-913 bp Feature: gene Location: 1027-2928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1294-2125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 94-2 12 5 bp Feature: domain Description: Intron_maturas2 Location: 2239-2497 bp Feature: domain Description: Intron_maturas2 Location: 2 2 39-2 497 bp Feature: domain Description: HNHc Note: nucleases Location: 2671-2833 bp Feature: domain Description: HNHc Note: nucleases Location: 2 671-2 833 bp Feature: gene Location: 3725-4060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)