myRT

myRT report for GCA_003000595.1_ASM300059v1

Download annotations/find similar RTs

Seq: PSQV01000001.1 Escherichia coli strain AR_0368 AR0368.contig.0_1, whole genome shotgun sequence (132767 bp)
Overview 1 RT 1: 90684-94335 bp Neighborhood of RT #1 [90684, 94340] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 90684-90824 bp Feature: gene Location: 91158-91367 bp Feature: gene Location: 91502-93403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91769-92600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 769-92600 bp Feature: domain Description: Intron_maturas2 Location: 92714-92972 bp Feature: domain Description: Intron_maturas2 Location: 9271 4-92972 bp Feature: domain Description: HNHc Note: nucleases Location: 93146-93308 bp Feature: domain Description: HNHc Note: nucleases Location: 931 46-93308 bp Feature: gene Location: 93598-94050 bp Feature: domain Description: PRK13732 Location: 93604-94048 bp Feature: domain Description: PRK1 3732 Location: 93604-94048 bp Feature: gene Location: 94107-94340 bp Feature: domain Description: DUF905 Location: 94137-94335 bp Feature: domain Description: DUF905 Location: 941 37-94335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PSQV01000007.1 Escherichia coli strain AR_0368 AR0368.contig.6_1, whole genome shotgun sequence (5135754 bp)
Overview 1 RT 1: 1460482-1466513 bp 2 RT 2: 3433120-3436185 bp 3 RT 3: 3459552-3463873 bp Neighborhood of RT #1 [1460482, 1466513] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Neighborhood of RT #2 [3433120, 3436185] RVT-GII GIIM RVT-GII Neighborhood of RT #3 [3459552, 3463926] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1460482-1461402 bp Feature: domain Description: AbiEii Location: 1460524-1461265 bp Feature: domain Description: AbiEii Location: 146052 4-14612 65 bp Feature: gene Location: 1461389-1462192 bp Feature: domain Description: AbiEi_3_N Location: 1461422-1461683 bp Feature: domain Description: AbiEi_3_N Location: 146142 2 -1461683 bp Feature: domain Description: AbiEi_3 Location: 1461695-1462151 bp Feature: domain Description: AbiEi_3 Location: 1461695-1462 151 bp Feature: gene Location: 1462487-1465696 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1463015-1463504 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1463015-1463504 bp Feature: domain Description: nitrilase Location: 1465010-1465607 bp Feature: domain Description: nitrilase Location: 1465010-1465607 bp Feature: gene Location: 1465857-1465997 bp Feature: domain Description: Phage_ASH Location: 1465884-1465977 bp Feature: domain Description: Phage_ASH Location: 1465884-1465977 bp Feature: gene Location: 1466043-1466513 bp Feature: gene Location: 3433120-3433290 bp Feature: gene Location: 3433428-3433607 bp Feature: gene Location: 3433706-3434227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433712-3433994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433712 -3433994 bp Feature: domain Description: GIIM Note: maturase Location: 3434042-3434222 bp Feature: domain Description: GIIM Note: maturase Location: 3434042 -34342 2 2 bp Feature: gene Location: 3434255-3434794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3434585-3434663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3434585-3434663 bp Feature: gene Location: 3434825-3435022 bp Feature: gene Location: 3435280-3436185 bp Feature: gene Location: 3459552-3460376 bp Feature: gene Location: 3460503-3460793 bp Feature: domain Description: PHA02517 Location: 3460509-3460728 bp Feature: domain Description: PHA02 517 Location: 3460509-346072 8 bp Feature: gene Location: 3461385-3462908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3461658-3462390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3461658-3462 390 bp Feature: domain Description: GIIM Note: maturase Location: 3462465-3462663 bp Feature: domain Description: GIIM Note: maturase Location: 3462 465-3462 663 bp Feature: gene Location: 3463085-3463471 bp Feature: domain Description: PHA02517 Location: 3463088-3463469 bp Feature: domain Description: PHA02 517 Location: 3463088-3463469 bp Feature: gene Location: 3463576-3463926 bp Feature: domain Description: InsE Location: 3463585-3463873 bp Feature: domain Description: InsE Location: 3463585-3463873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)