myRT

myRT report for GCA_003000695.1_ASM300069v1

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Seq: PSQS01000003.1 Pseudomonas aeruginosa strain AR_0359 AR0359.contig.2_1, whole genome shotgun sequence (6935329 bp)
Overview 1 RT 1: 1115286-1124130 bp 2 RT 2: 1140394-1149985 bp 3 RT 3: 3165761-3172318 bp Neighborhood of RT #1 [1115286, 1124138] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [1140394, 1150038] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH INT_Rci_Hp1_C Neighborhood of RT #3 [3165761, 3173274] LysR HepA SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf AdoMet_MTases Feature: gene Location: 1115286-1115960 bp Feature: domain Description: NTP_transferase_like_1 Location: 1115292-1115931 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 1 1 5292-1 1 1 5931 bp Feature: gene Location: 1115957-1116973 bp Feature: domain Description: COG3178 Location: 1115960-1116959 bp Feature: domain Description: COG31 78 Location: 1 1 1 5960-1 1 1 6959 bp Feature: gene Location: 1118246-1119958 bp Feature: RT Description: RVT_N Location: 1118303-1118546 bp Feature: RT Description: RVT_N Location: 1 1 1 8303-1 1 1 8546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1118591-1119227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 8591 -1 1 1 9227 bp Feature: domain Description: YkfC Location: 1119437-1119587 bp Feature: domain Description: YkfC Location: 1 1 1 9437-1 1 1 9587 bp Feature: domain Description: HNH Note: nucleases Location: 1119764-1119902 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 1 9764-1 1 1 9902 bp Feature: gene Location: 1120091-1122865 bp Feature: domain Description: LptD Location: 1120286-1122851 bp Feature: domain Description: LptD Location: 1 1 20286-1 1 22851 bp Feature: gene Location: 1122924-1124138 bp Feature: domain Description: PRK10770 Location: 1122936-1124130 bp Feature: domain Description: PRK1 0770 Location: 1 1 22936-1 1 241 30 bp Feature: gene Location: 1140394-1142247 bp Feature: domain Description: PRK05658 Location: 1140406-1142245 bp Feature: domain Description: PRK05658 Location: 1 1 40406-1 1 42245 bp Feature: gene Location: 1142354-1146091 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1142462-1143119 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 1 42462-1 1 431 1 9 bp Feature: domain Description: PRK09776 Location: 1143332-1143803 bp Feature: domain Description: PRK09776 Location: 1 1 43332-1 1 43803 bp Feature: domain Description: PAS Location: 1143875-1144385 bp Feature: domain Description: PAS Location: 1 1 43875-1 1 44385 bp Feature: domain Description: PRK10060 Location: 1144394-1146041 bp Feature: domain Description: PRK1 0060 Location: 1 1 44394-1 1 46041 bp Feature: gene Location: 1147172-1148857 bp Feature: RT Description: RVT_N Location: 1147229-1147469 bp Feature: RT Description: RVT_N Location: 1 1 47229-1 1 47469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147517-1148153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4751 7-1 1 481 53 bp Feature: domain Description: GIIM Note: maturase Location: 1148207-1148438 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 48207-1 1 48438 bp Feature: domain Description: HNH Note: nucleases Location: 1148690-1148828 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 48690-1 1 48828 bp Feature: gene Location: 1149292-1149606 bp Feature: gene Location: 1149631-1150038 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1149670-1149985 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 1 49670-1 1 49985 bp Feature: gene Location: 3165761-3166774 bp Feature: domain Description: LysR Location: 3165764-3166664 bp Feature: domain Description: LysR Location: 31 65764-31 66664 bp Feature: gene Location: 3167057-3168316 bp Feature: domain Description: HepA Location: 3167069-3167207 bp Feature: domain Description: HepA Location: 31 67069-31 67207 bp Feature: domain Description: SF2_C_SNF Location: 3167771-3168152 bp Feature: domain Description: SF2_C_SNF Location: 31 67771 -31 681 52 bp Feature: gene Location: 3168384-3170102 bp Feature: RT Description: RVT_N Location: 3168441-3168678 bp Feature: RT Description: RVT_N Location: 31 68441 -31 68678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3168729-3169380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 68729-31 69380 bp Feature: domain Description: GIIM Note: maturase Location: 3169434-3169665 bp Feature: domain Description: GIIM Note: maturase Location: 31 69434-31 69665 bp Feature: domain Description: HNHc Note: nucleases Location: 3169899-3170055 bp Feature: domain Description: HNHc Note: nucleases Location: 31 69899-31 70055 bp Feature: gene Location: 3170699-3171724 bp Feature: domain Description: DEXHc_Snf Location: 3170891-3171137 bp Feature: domain Description: DEXHc_Snf Location: 31 70891 -31 71 1 37 bp Feature: gene Location: 3171829-3173274 bp Feature: domain Description: AdoMet_MTases Location: 3171952-3172318 bp Feature: domain Description: AdoMet_MTases Location: 31 71 952-31 7231 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), INT_Rci_Hp1_C (cd00796), LysR (COG0583), HepA (COG0553), SF2_C_SNF (cd18793), HNHc (smart00507), DEXHc_Snf (cd17919)
AdoMet_MTases (cl17173)