myRT

myRT report for GCA_003000915.1_ASM300091v1

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Seq: PSSA01000022.1 Escherichia sp. R7 NODE_22_length_76163_cov_33.5358, whole genome shotgun sequence (76163 bp)
Overview 1 RT 1: 4566-11018 bp Neighborhood of RT #1 [4566, 11018] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 4566-4817 bp Feature: gene Location: 4847-5683 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 5336-5507 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 5336-5507 bp Feature: gene Location: 6339-7439 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6522-7050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6522-7050 bp Feature: gene Location: 7554-9800 bp Feature: domain Description: AAA_15 Location: 7557-8565 bp Feature: domain Description: AAA_1 5 Location: 7557-8565 bp Feature: gene Location: 10713-11018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: PSSA01000028.1 Escherichia sp. R7 NODE_28_length_53807_cov_39.3442, whole genome shotgun sequence (53807 bp)
Overview 1 RT 1: 15603-19894 bp Neighborhood of RT #1 [15603, 19894] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 15603-16865 bp Feature: domain Description: YesM Location: 16116-16857 bp Feature: domain Description: YesM Location: 16116-16857 bp Feature: gene Location: 16895-17065 bp Feature: gene Location: 17415-17936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17421-17703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742 1-17703 bp Feature: domain Description: GIIM Note: maturase Location: 17751-17931 bp Feature: domain Description: GIIM Note: maturase Location: 17751-17931 bp Feature: gene Location: 17964-18503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18294-18372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 94-18372 bp Feature: gene Location: 18534-18731 bp Feature: gene Location: 18989-19894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: PSSA01000052.1 Escherichia sp. R7 NODE_52_length_14578_cov_45.6654, whole genome shotgun sequence (14578 bp)
Overview 1 RT 1: 10756-14510 bp Neighborhood of RT #1 [10756, 14575] QdoI PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 10756-11106 bp Feature: domain Description: QdoI Location: 10822-11074 bp Feature: domain Description: QdoI Location: 10822-11074 bp Feature: gene Location: 11709-12155 bp Feature: domain Description: PHA02517 Location: 11712-12153 bp Feature: domain Description: PHA02517 Location: 11712-12153 bp Feature: gene Location: 12272-13795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12545-13277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12545-13 277 bp Feature: domain Description: GIIM Note: maturase Location: 13352-13550 bp Feature: domain Description: GIIM Note: maturase Location: 13 3 52-13 550 bp Feature: gene Location: 14387-14575 bp Feature: domain Description: PHA02517 Location: 14390-14510 bp Feature: domain Description: PHA02517 Location: 143 90-14510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QdoI (COG1917), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)