myRT

myRT report for GCA_003001025.1_ASM300102v1

Download annotations/find similar RTs

Seq: PSSH01000002.1 Escherichia sp. R15 NODE_2_length_320453_cov_53.1072, whole genome shotgun sequence (320453 bp)
Overview 1 RT 1: 258907-267198 bp Neighborhood of RT #1 [258907, 267317] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP phage_tail_N 7tmA_amine_R-like Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 258907-260493 bp Feature: domain Description: prfC Location: 258925-260491 bp Feature: domain Description: prfC Location: 258925-260491 bp Feature: gene Location: 260713-260973 bp Feature: domain Description: PRK10597 Location: 260716-260956 bp Feature: domain Description: PRK1 0597 Location: 26071 6-260956 bp Feature: gene Location: 261333-262937 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 261624-262215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 261 624-26221 5 bp Feature: domain Description: TIR_2 Location: 262542-262830 bp Feature: domain Description: TIR_2 Location: 262542-262830 bp Feature: gene Location: 263383-263967 bp Feature: domain Description: Caudo_TAP Location: 263599-263956 bp Feature: domain Description: Caudo_TAP Location: 263599-263956 bp Feature: gene Location: 263967-267317 bp Feature: domain Description: phage_tail_N Location: 263970-264369 bp Feature: domain Description: phage_tail_N Location: 263970-264369 bp Feature: domain Description: 7tmA_amine_R-like Location: 264870-265299 bp Feature: domain Description: 7tmA_amine_R-like Location: 264870-265299 bp Feature: domain Description: Collar Location: 266688-266826 bp Feature: domain Description: Collar Location: 266688-266826 bp Feature: domain Description: Phage_fiber Location: 266877-266916 bp Feature: domain Description: Phage_fiber Location: 266877-26691 6 bp Feature: domain Description: Phage_fiber Location: 266973-267012 bp Feature: domain Description: Phage_fiber Location: 266973-26701 2 bp Feature: domain Description: Phage_fiber Location: 267120-267159 bp Feature: domain Description: Phage_fiber Location: 2671 20-2671 59 bp Feature: domain Description: Phage_fiber Location: 267165-267198 bp Feature: domain Description: Phage_fiber Location: 2671 65-2671 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: PSSH01000062.1 Escherichia sp. R15 NODE_62_length_13278_cov_38.0492, whole genome shotgun sequence (13278 bp)
Overview 1 RT 1: 163-2955 bp Neighborhood of RT #1 [163, 3008] RVT-GII GIIM PRK10002 Feature: gene Location: 163-1509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 59-991 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1264 bp Feature: domain Description: GIIM Note: maturase Location: 1066-12 64 bp Feature: gene Location: 1596-1781 bp Feature: gene Location: 2028-3008 bp Feature: domain Description: PRK10002 Location: 2031-2955 bp Feature: domain Description: PRK10002 Location: 2 031-2 955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK10002 (porin OmpF)

Seq: PSSH01000066.1 Escherichia sp. R15 NODE_66_length_11766_cov_53.99, whole genome shotgun sequence (11766 bp)
Overview 1 RT 1: 4080-7969 bp Neighborhood of RT #1 [4080, 7974] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 4080-4394 bp Feature: gene Location: 4792-4989 bp Feature: gene Location: 5158-5592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5350-5566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 50-5566 bp Feature: gene Location: 5565-6218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5568-5976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5568-5976 bp Feature: domain Description: GIIM Note: maturase Location: 6024-6216 bp Feature: domain Description: GIIM Note: maturase Location: 6024-6216 bp Feature: gene Location: 6594-6812 bp Feature: gene Location: 6943-7974 bp Feature: domain Description: LacI Location: 6985-7120 bp Feature: domain Description: LacI Location: 6985-7120 bp Feature: domain Description: PBP1_GntR Location: 7159-7969 bp Feature: domain Description: PBP1_GntR Location: 7159-7969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: PSSH01000076.1 Escherichia sp. R15 NODE_76_length_6711_cov_23.67, whole genome shotgun sequence (6711 bp)
Overview 1 RT 1: 1186-5258 bp Neighborhood of RT #1 [1186, 5260] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 1186-1659 bp Feature: gene Location: 1771-1953 bp Feature: gene Location: 2233-3900 bp Feature: RT Description: RVT_N Location: 2281-2518 bp Feature: RT Description: RVT_N Location: 2281-2518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2569-3211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2569-3211 bp Feature: domain Description: GIIM Note: maturase Location: 3262-3496 bp Feature: domain Description: GIIM Note: maturase Location: 3262-34 96 bp Feature: domain Description: HNHc Note: nucleases Location: 3706-3865 bp Feature: domain Description: HNHc Note: nucleases Location: 3706-3865 bp Feature: gene Location: 4369-4788 bp Feature: domain Description: DUF1380 Location: 4372-4675 bp Feature: domain Description: DUF1380 Location: 4 372-4 675 bp Feature: gene Location: 4835-5260 bp Feature: domain Description: Antirestrict Location: 4970-5258 bp Feature: domain Description: Antirestrict Location: 4 970-5258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)