myRT

myRT report for GCA_003001115.1_ASM300111v1

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Seq: PSRX01000023.1 Escherichia sp. R4 NODE_23_length_76163_cov_35.8279, whole genome shotgun sequence (76163 bp)
Overview 1 RT 1: 4566-11018 bp Neighborhood of RT #1 [4566, 11018] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 4566-4817 bp Feature: gene Location: 4847-5683 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 5336-5507 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 5336-5507 bp Feature: gene Location: 6339-7439 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6522-7050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6522-7050 bp Feature: gene Location: 7554-9800 bp Feature: domain Description: AAA_15 Location: 7557-8565 bp Feature: domain Description: AAA_1 5 Location: 7557-8565 bp Feature: gene Location: 10713-11018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: PSRX01000030.1 Escherichia sp. R4 NODE_30_length_53834_cov_42.171, whole genome shotgun sequence (53834 bp)
Overview 1 RT 1: 33941-38224 bp Neighborhood of RT #1 [33941, 38232] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 33941-34846 bp Feature: gene Location: 35104-35301 bp Feature: gene Location: 35332-35871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35662-35740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35662 -35740 bp Feature: gene Location: 35899-36420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35905-36187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35905-36187 bp Feature: domain Description: GIIM Note: maturase Location: 36235-36415 bp Feature: domain Description: GIIM Note: maturase Location: 362 35-36415 bp Feature: gene Location: 36742-36930 bp Feature: gene Location: 36970-38232 bp Feature: domain Description: YesM Location: 37483-38224 bp Feature: domain Description: YesM Location: 37483-382 2 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: PSRX01000053.1 Escherichia sp. R4 NODE_53_length_14578_cov_49.034, whole genome shotgun sequence (14578 bp)
Overview 1 RT 1: 10756-14510 bp Neighborhood of RT #1 [10756, 14575] QdoI PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 10756-11106 bp Feature: domain Description: QdoI Location: 10822-11074 bp Feature: domain Description: QdoI Location: 10822-11074 bp Feature: gene Location: 11709-12155 bp Feature: domain Description: PHA02517 Location: 11712-12153 bp Feature: domain Description: PHA02517 Location: 11712-12153 bp Feature: gene Location: 12272-13795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12545-13277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12545-13 277 bp Feature: domain Description: GIIM Note: maturase Location: 13352-13550 bp Feature: domain Description: GIIM Note: maturase Location: 13 3 52-13 550 bp Feature: gene Location: 14387-14575 bp Feature: domain Description: PHA02517 Location: 14390-14510 bp Feature: domain Description: PHA02517 Location: 143 90-14510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QdoI (COG1917), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)