myRT

myRT report for GCA_003001875.1_ASM300187v1

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Seq: PVNC01000002.1 Paraburkholderia sp. BL18I3N2 Ga0139061_102, whole genome shotgun sequence (797550 bp)
Overview 1 RT 1: 423097-428944 bp Neighborhood of RT #1 [423097, 428952] 2A0305 GlxA GyrI-like RVT-Retrons PAAR_CT_2 VgrG Feature: gene Location: 423097-424554 bp Feature: domain Description: 2A0305 Location: 423196-424540 bp Feature: domain Description: 2A0305 Location: 4231 96-424540 bp Feature: gene Location: 424771-425637 bp Feature: domain Description: GlxA Location: 424798-425116 bp Feature: domain Description: GlxA Location: 424798-4251 1 6 bp Feature: domain Description: GyrI-like Location: 425170-425632 bp Feature: domain Description: GyrI-like Location: 4251 70-425632 bp Feature: gene Location: 426275-427642 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 426740-427379 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 426740-427379 bp Feature: gene Location: 427825-427953 bp Feature: domain Description: PAAR_CT_2 Location: 427843-427948 bp Feature: domain Description: PAAR_CT_2 Location: 427843-427948 bp Feature: gene Location: 428521-428952 bp Feature: domain Description: VgrG Location: 428563-428944 bp Feature: domain Description: VgrG Location: 428563-428944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0305 (TIGR00908), GlxA (COG4977), GyrI-like (pfam06445), RVT-Retrons, PAAR_CT_2 (cd14744), VgrG (COG3501)

Seq: PVNC01000009.1 Paraburkholderia sp. BL18I3N2 Ga0139061_109, whole genome shotgun sequence (258732 bp)
Overview 1 RT 1: 26746-35541 bp Neighborhood of RT #1 [26746, 35543] LpxC DciA RVT_N RVT-GII GIIM HNHc PRK12904 argJ Feature: gene Location: 26746-27663 bp Feature: domain Description: LpxC Location: 26749-27628 bp Feature: domain Description: LpxC Location: 2 6749-2 762 8 bp Feature: gene Location: 27735-28289 bp Feature: domain Description: DciA Location: 27873-28128 bp Feature: domain Description: DciA Location: 2 7873-2 812 8 bp Feature: gene Location: 29439-31139 bp Feature: domain Description: RVT_N Location: 29496-29739 bp Feature: domain Description: RVT_N Location: 2 9496-2 9739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29784-30432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9784-30432 bp Feature: domain Description: GIIM Note: maturase Location: 30486-30717 bp Feature: domain Description: GIIM Note: maturase Location: 30486-30717 bp Feature: domain Description: HNHc Note: nucleases Location: 30933-31101 bp Feature: domain Description: HNHc Note: nucleases Location: 30933-31101 bp Feature: gene Location: 31291-34152 bp Feature: domain Description: PRK12904 Location: 31354-34144 bp Feature: domain Description: PRK12 904 Location: 31354-34144 bp Feature: gene Location: 34302-35543 bp Feature: domain Description: argJ Location: 34341-35541 bp Feature: domain Description: argJ Location: 34341-35541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LpxC (pfam03331), DciA, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK12904 (preprotein translocase subunit SecA; Reviewed), argJ (PRK05388)

Seq: PVNC01000029.1 Paraburkholderia sp. BL18I3N2 Ga0139061_129, whole genome shotgun sequence (56646 bp)
Overview 1 RT 1: 12-3339 bp 2 RT 2: 52242-55466 bp Neighborhood of RT #1 [12, 3341] RVT-GII nifA Neighborhood of RT #2 [52242, 55588] Resolvase Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM HTH_21 CypX Feature: gene Location: 12-230 bp Feature: gene Location: 373-756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445-646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445-646 bp Feature: gene Location: 854-1000 bp Feature: gene Location: 1506-3341 bp Feature: domain Description: nifA Location: 1662-3339 bp Feature: domain Description: nifA Location: 1662-3 3 3 9 bp Feature: gene Location: 52242-52490 bp Feature: domain Description: Resolvase Location: 52254-52473 bp Feature: domain Description: Resolvase Location: 52254-52473 bp Feature: gene Location: 52511-53926 bp Feature: domain Description: Resolvase Location: 52520-52694 bp Feature: domain Description: Resolvase Location: 52520-52694 bp Feature: domain Description: Recombinase Location: 52781-53144 bp Feature: domain Description: Recombinase Location: 52781-53 144 bp Feature: domain Description: Zn_ribbon_recom Location: 53183-53372 bp Feature: domain Description: Zn_ribbon_recom Location: 53 183 -53 3 72 bp Feature: gene Location: 54009-54569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54012-54183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54012-54183 bp Feature: domain Description: GIIM Note: maturase Location: 54264-54495 bp Feature: domain Description: GIIM Note: maturase Location: 54264-54495 bp Feature: gene Location: 54804-54980 bp Feature: domain Description: HTH_21 Location: 54813-54978 bp Feature: domain Description: HTH_21 Location: 54813 -54978 bp Feature: gene Location: 55007-55588 bp Feature: domain Description: CypX Location: 55073-55466 bp Feature: domain Description: CypX Location: 55073 -55466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, nifA (TIGR01817), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), HTH_21 (pfam13276), CypX (COG2124)

Seq: PVNC01000046.1 Paraburkholderia sp. BL18I3N2 Ga0139061_146, whole genome shotgun sequence (8287 bp)
Overview 1 RT 1: 1-3156 bp Neighborhood of RT #1 [1, 3257] RVT-GII IS285 GIIM Feature: gene Location: 1-162 bp Feature: gene Location: 541-1593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892-14 71 bp Feature: gene Location: 2065-2814 bp Feature: domain Description: IS285 Location: 2149-2662 bp Feature: domain Description: IS285 Location: 214 9-2662 bp Feature: gene Location: 2934-3257 bp Feature: domain Description: GIIM Note: maturase Location: 2943-3156 bp Feature: domain Description: GIIM Note: maturase Location: 294 3-3156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS285 (COG3328), GIIM (pfam08388)