myRT

myRT report for GCA_003001935.1_ASM300193v1

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Seq: PVNG01000015.1 Nonomuraea fuscirosea strain CGMCC 4.7104 Ga0171605_115, whole genome shotgun sequence (334357 bp)
Overview 1 RT 1: 297544-303019 bp Neighborhood of RT #1 [297544, 303019] DDE_Tnp_4 HTH_29 DDE_3 RVT-GII GIIM HTH_Tnp_4 DDE_Tnp_4 Feature: gene Location: 297544-297891 bp Feature: domain Description: DDE_Tnp_4 Location: 297550-297856 bp Feature: domain Description: DDE_Tnp_4 Location: 297550-297856 bp Feature: gene Location: 298068-299261 bp Feature: domain Description: HTH_29 Location: 298161-298317 bp Feature: domain Description: HTH_29 Location: 2981 61 -29831 7 bp Feature: domain Description: DDE_3 Location: 298563-298959 bp Feature: domain Description: DDE_3 Location: 298563-298959 bp Feature: gene Location: 299811-301190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300129-300759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3001 29-300759 bp Feature: domain Description: GIIM Note: maturase Location: 300843-301068 bp Feature: domain Description: GIIM Note: maturase Location: 300843-301 068 bp Feature: gene Location: 301481-302254 bp Feature: domain Description: HTH_Tnp_4 Location: 301583-301733 bp Feature: domain Description: HTH_Tnp_4 Location: 301 583-301 733 bp Feature: domain Description: DDE_Tnp_4 Location: 301793-302231 bp Feature: domain Description: DDE_Tnp_4 Location: 301 793-302231 bp Feature: gene Location: 302621-303019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_4 (pfam13359), HTH_29 (pfam13551), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), HTH_Tnp_4 (pfam13613)

Seq: PVNG01000039.1 Nonomuraea fuscirosea strain CGMCC 4.7104 Ga0171605_139, whole genome shotgun sequence (63068 bp)
Overview 1 RT 1: 54049-60252 bp Neighborhood of RT #1 [54049, 60533] DDE_5 RVT-GII RVT-GII DUF3987 Feature: gene Location: 54049-55224 bp Feature: domain Description: DDE_5 Location: 54088-54733 bp Feature: domain Description: DDE_5 Location: 54088-54733 bp Feature: gene Location: 55941-56144 bp Feature: gene Location: 57102-57497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57249-57450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 572 49-57450 bp Feature: gene Location: 57424-58044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57445-57841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57445-57841 bp Feature: gene Location: 58115-58873 bp Feature: gene Location: 58995-60533 bp Feature: domain Description: DUF3987 Location: 59172-60252 bp Feature: domain Description: DUF3987 Location: 59172 -602 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, DUF3987 (pfam13148)

Seq: PVNG01000066.1 Nonomuraea fuscirosea strain CGMCC 4.7104 Ga0171605_166, whole genome shotgun sequence (9676 bp)
Overview 1 RT 1: 197-3860 bp Neighborhood of RT #1 [197, 3860] RVT_N RVT-GII RVT-GII SsuE Feature: gene Location: 197-922 bp Feature: domain Description: RVT_N Location: 338-575 bp Feature: domain Description: RVT_N Location: 3 3 8-575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629-806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629-806 bp Feature: gene Location: 1476-1907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1578-1809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1578-1809 bp Feature: gene Location: 2840-3460 bp Feature: domain Description: SsuE Location: 2852-3335 bp Feature: domain Description: SsuE Location: 2852-3 3 3 5 bp Feature: gene Location: 3588-3860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, SsuE (COG0431)

Seq: PVNG01000070.1 Nonomuraea fuscirosea strain CGMCC 4.7104 Ga0171605_170, whole genome shotgun sequence (6005 bp)
Overview 1 RT 1: 794-5919 bp Neighborhood of RT #1 [794, 6002] RVT_N RVT-GII GIIM RVT-GII Feature: gene Location: 794-1945 bp Feature: domain Description: RVT_N Location: 839-1076 bp Feature: domain Description: RVT_N Location: 839-1076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1136-1790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1136-1790 bp Feature: gene Location: 1967-2563 bp Feature: domain Description: GIIM Note: maturase Location: 1973-2081 bp Feature: domain Description: GIIM Note: maturase Location: 1973-2081 bp Feature: gene Location: 2701-3249 bp Feature: gene Location: 3361-4854 bp Feature: gene Location: 4910-5770 bp Feature: gene Location: 5811-6002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5814-5919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5814 -5919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PVNG01000090.1 Nonomuraea fuscirosea strain CGMCC 4.7104 Ga0171605_190, whole genome shotgun sequence (1152 bp)
Overview 1 RT 1: 64-946 bp Neighborhood of RT #1 [64, 1149] RVT-GII GIIM Feature: gene Location: 64-1149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70-643 bp Feature: domain Description: GIIM Note: maturase Location: 712-946 bp Feature: domain Description: GIIM Note: maturase Location: 712-946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)