myRT

myRT report for GCA_003003615.1_ASM300361v1

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Seq: PVWD01000020.1 Filamentous cyanobacterium CCP2 NODE_21_length_42009_cov_5.24025_ID_77293, whole genome shotgun sequence (41975 bp)
Overview 1 RT 1: 2389-14822 bp Neighborhood of RT #1 [2389, 14822] KOG1130 TPR_12 KOG1130 TPR_7 KOG1130 TPR_12 TPR_7 KOG1130 PPC RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat YD_repeat_2x RHS_repeat Rhs_assc_core HemolysinCabind HemolysinCabind RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 2389-4932 bp Feature: domain Description: KOG1130 Location: 2701-2860 bp Feature: domain Description: KOG1 1 30 Location: 2701 -2860 bp Feature: domain Description: TPR_12 Location: 2890-3100 bp Feature: domain Description: TPR_1 2 Location: 2890-31 00 bp Feature: domain Description: KOG1130 Location: 3208-3691 bp Feature: domain Description: KOG1 1 30 Location: 3208-3691 bp Feature: domain Description: TPR_7 Location: 3733-3835 bp Feature: domain Description: TPR_7 Location: 3733-3835 bp Feature: domain Description: KOG1130 Location: 3901-4084 bp Feature: domain Description: KOG1 1 30 Location: 3901 -4084 bp Feature: domain Description: TPR_12 Location: 4087-4300 bp Feature: domain Description: TPR_1 2 Location: 4087-4300 bp Feature: domain Description: TPR_7 Location: 4336-4429 bp Feature: domain Description: TPR_7 Location: 4336-4429 bp Feature: domain Description: KOG1130 Location: 4492-4888 bp Feature: domain Description: KOG1 1 30 Location: 4492-4888 bp Feature: gene Location: 5120-11335 bp Feature: domain Description: PPC Location: 6113-6299 bp Feature: domain Description: PPC Location: 61 1 3-6299 bp Feature: domain Description: RHS_repeat Location: 7499-7583 bp Feature: domain Description: RHS_repeat Location: 7499-7583 bp Feature: domain Description: RHS_repeat Location: 7676-7763 bp Feature: domain Description: RHS_repeat Location: 7676-7763 bp Feature: domain Description: RHS_repeat Location: 7868-7967 bp Feature: domain Description: RHS_repeat Location: 7868-7967 bp Feature: domain Description: RHS_repeat Location: 7991-8105 bp Feature: domain Description: RHS_repeat Location: 7991 -81 05 bp Feature: domain Description: RHS_repeat Location: 8183-8270 bp Feature: domain Description: RHS_repeat Location: 81 83-8270 bp Feature: domain Description: RHS_repeat Location: 8366-8456 bp Feature: domain Description: RHS_repeat Location: 8366-8456 bp Feature: domain Description: RHS_repeat Location: 8558-8648 bp Feature: domain Description: RHS_repeat Location: 8558-8648 bp Feature: domain Description: RHS_repeat Location: 8699-8783 bp Feature: domain Description: RHS_repeat Location: 8699-8783 bp Feature: domain Description: YD_repeat_2x Location: 8819-8879 bp Feature: domain Description: YD_repeat_2x Location: 881 9-8879 bp Feature: domain Description: RHS_repeat Location: 8948-9050 bp Feature: domain Description: RHS_repeat Location: 8948-9050 bp Feature: domain Description: Rhs_assc_core Location: 9323-9557 bp Feature: domain Description: Rhs_assc_core Location: 9323-9557 bp Feature: domain Description: HemolysinCabind Location: 10916-11018 bp Feature: domain Description: HemolysinCabind Location: 1 091 6-1 1 01 8 bp Feature: domain Description: HemolysinCabind Location: 11024-11123 bp Feature: domain Description: HemolysinCabind Location: 1 1 024-1 1 1 23 bp Feature: gene Location: 11437-13749 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 11791-12388 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 1 791 -1 2388 bp Feature: domain Description: Cas1_I-II-III Location: 12673-13711 bp Feature: domain Description: Cas1 _I-II-III Location: 1 2673-1 371 1 bp Feature: gene Location: 13752-14027 bp Feature: domain Description: Cas2_I_II_III Location: 13761-13989 bp Feature: domain Description: Cas2_I_II_III Location: 1 3761 -1 3989 bp Feature: gene Location: 14277-14822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1130 (KOG1130, Predicted G-alpha GTPase interaction protein, contains GoLoco domain ), TPR_12 (pfam13424), TPR_7 (pfam13176), PPC (pfam04151), RHS_repeat (pfam05593), YD_repeat_2x (TIGR01643), Rhs_assc_core (TIGR03696), HemolysinCabind (pfam00353), RVT-CRISPR, Cas1_I-II-III (cl00656)
Cas2_I_II_III (cl11442)

Seq: PVWD01000006.1 Filamentous cyanobacterium CCP2 NODE_6_length_61626_cov_5.93969_ID_77783, whole genome shotgun sequence (61626 bp)
Overview 1 RT 1: 3-4445 bp 2 RT 2: 16715-20617 bp Neighborhood of RT #1 [3, 4486] RVT_N RVT-GII GIIM HNHc InsE PHA02517 Neighborhood of RT #2 [16715, 20617] DDE_Tnp_1_6 RVT-GII GIIM Feature: gene Location: 3-419 bp Feature: gene Location: 539-808 bp Feature: gene Location: 1311-2981 bp Feature: domain Description: RVT_N Location: 1341-1587 bp Feature: domain Description: RVT_N Location: 1341-1587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635-2295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635-2 2 95 bp Feature: domain Description: GIIM Note: maturase Location: 2385-2601 bp Feature: domain Description: GIIM Note: maturase Location: 2 385-2 601 bp Feature: domain Description: HNHc Note: nucleases Location: 2817-2967 bp Feature: domain Description: HNHc Note: nucleases Location: 2 817-2 967 bp Feature: gene Location: 3330-3635 bp Feature: domain Description: InsE Location: 3336-3609 bp Feature: domain Description: InsE Location: 3336-3609 bp Feature: gene Location: 3632-4486 bp Feature: domain Description: PHA02517 Location: 3734-4445 bp Feature: domain Description: PHA02 517 Location: 3734-4445 bp Feature: gene Location: 16715-17893 bp Feature: domain Description: DDE_Tnp_1_6 Location: 17450-17822 bp Feature: domain Description: DDE_Tnp_1_6 Location: 17450-1782 2 bp Feature: gene Location: 18205-18486 bp Feature: gene Location: 18492-19877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18819-19503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18819-19503 bp Feature: domain Description: GIIM Note: maturase Location: 19584-19791 bp Feature: domain Description: GIIM Note: maturase Location: 19584-19791 bp Feature: gene Location: 20162-20380 bp Feature: gene Location: 20414-20617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1_6 (pfam13751)

Seq: PVWD01000336.1 Filamentous cyanobacterium CCP2 NODE_845_length_6689_cov_5.75544_ID_117621, whole genome shotgun sequence (6637 bp)
Overview 1 RT 1: 2-2200 bp Neighborhood of RT #1 [2, 2910] RVT-CRISPR-like DUF4058 HTH_XRE AAA_16 Feature: gene Location: 2-427 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 194-413 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 194-413 bp Feature: gene Location: 670-1413 bp Feature: domain Description: DUF4058 Location: 673-1399 bp Feature: domain Description: DUF4058 Location: 673 -13 99 bp Feature: gene Location: 1468-2910 bp Feature: domain Description: HTH_XRE Location: 1546-1663 bp Feature: domain Description: HTH_XRE Location: 1546-1663 bp Feature: domain Description: AAA_16 Location: 1765-2200 bp Feature: domain Description: AAA_16 Location: 1765-2200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, DUF4058 (pfam13267), HTH_XRE (smart00530), AAA_16 (pfam13191)