myRT

myRT report for GCA_003003695.1_ASM300369v1

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Seq: PVWG01000100.1 Phormidesmis priestleyi ULC007 NODE_101_length_2542_cov_182.046_ID_17917, whole genome shotgun sequence (2542 bp)
Overview 1 RT 1: 1-1828 bp Neighborhood of RT #1 [1, 1857] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 1-222 bp Feature: gene Location: 346-1857 bp Feature: domain Description: RVT_N Location: 382-628 bp Feature: domain Description: RVT_N Location: 382-628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679-1 099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-1273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 08-1 273 bp Feature: domain Description: McrA Location: 1504-1828 bp Feature: domain Description: McrA Location: 1 504-1 828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: PVWG01000105.1 Phormidesmis priestleyi ULC007 NODE_106_length_2106_cov_468.817_ID_17927, whole genome shotgun sequence (2106 bp)
Overview 1 RT 1: 345-2004 bp Neighborhood of RT #1 [345, 2009] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 345-2009 bp Feature: domain Description: RVT_N Location: 390-630 bp Feature: domain Description: RVT_N Location: 390-630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684-132 9 bp Feature: domain Description: GIIM Note: maturase Location: 1401-1635 bp Feature: domain Description: GIIM Note: maturase Location: 1401-1635 bp Feature: domain Description: HNHc Note: nucleases Location: 1860-2004 bp Feature: domain Description: HNHc Note: nucleases Location: 1860-2 004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PVWG01000137.1 Phormidesmis priestleyi ULC007 NODE_138_length_864_cov_177.848_ID_17991, whole genome shotgun sequence (864 bp)
Overview 1 RT 1: 55-832 bp Neighborhood of RT #1 [55, 861] RVT-GII McrA Feature: gene Location: 55-861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-277 bp Feature: domain Description: McrA Location: 508-832 bp Feature: domain Description: McrA Location: 508-83 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, McrA (COG4058)

Seq: PVWG01000151.1 Phormidesmis priestleyi ULC007 NODE_152_length_677_cov_82.3317_ID_18019, whole genome shotgun sequence (677 bp)
Overview 1 RT 1: 1-661 bp Neighborhood of RT #1 [1, 675] RVT_N RVT-GII Feature: gene Location: 1-675 bp Feature: domain Description: RVT_N Location: 10-175 bp Feature: domain Description: RVT_N Location: 10-175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: PVWG01000152.1 Phormidesmis priestleyi ULC007 NODE_153_length_677_cov_87.925_ID_18021, whole genome shotgun sequence (677 bp)
Overview 1 RT 1: 1-661 bp Neighborhood of RT #1 [1, 675] RVT_N RVT-GII Feature: gene Location: 1-675 bp Feature: domain Description: RVT_N Location: 10-175 bp Feature: domain Description: RVT_N Location: 10-175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: PVWG01000003.1 Phormidesmis priestleyi ULC007 NODE_3_length_281269_cov_90.5355_ID_17721, whole genome shotgun sequence (281269 bp)
Overview 1 RT 1: 195377-199121 bp Neighborhood of RT #1 [195377, 199270] PRK09907 RVT-UG12 PhoH YlqC Feature: gene Location: 195377-195706 bp Feature: domain Description: PRK09907 Location: 195383-195704 bp Feature: domain Description: PRK09907 Location: 195383-195704 bp Feature: gene Location: 195835-195975 bp Feature: gene Location: 196002-197579 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 196347-196800 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 196 347-196 800 bp Feature: gene Location: 197744-198697 bp Feature: domain Description: PhoH Location: 197756-198692 bp Feature: domain Description: PhoH Location: 197756 -1986 92 bp Feature: gene Location: 198884-199270 bp Feature: domain Description: YlqC Location: 198917-199121 bp Feature: domain Description: YlqC Location: 198917-199121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09907 (endoribonuclease MazF), RVT-UG12, PhoH (pfam02562), YlqC (COG1837)

Seq: PVWG01000046.1 Phormidesmis priestleyi ULC007 NODE_46_length_35251_cov_88.9895_ID_17807, whole genome shotgun sequence (35251 bp)
Overview 1 RT 1: 31397-34363 bp Neighborhood of RT #1 [31397, 34363] RVT-GII RVT-GII GIIM TPR Feature: gene Location: 31397-31678 bp Feature: gene Location: 31667-31795 bp Feature: gene Location: 31954-32673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32230-32668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32230-32668 bp Feature: gene Location: 32746-33288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32755-32851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327 55-32851 bp Feature: domain Description: GIIM Note: maturase Location: 32893-33100 bp Feature: domain Description: GIIM Note: maturase Location: 32893-33100 bp Feature: gene Location: 33408-33797 bp Feature: domain Description: TPR Location: 33447-33753 bp Feature: domain Description: TPR Location: 33447 -337 53 bp Feature: gene Location: 33794-34363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TPR (smart00028)

Seq: PVWG01000064.1 Phormidesmis priestleyi ULC007 NODE_64_length_20207_cov_318.872_ID_17843, whole genome shotgun sequence (20207 bp)
Overview 1 RT 1: 1953-5071 bp Neighborhood of RT #1 [1953, 5071] eMpr RVT_N RVT-GII Feature: gene Location: 1953-2891 bp Feature: domain Description: eMpr Location: 2217-2871 bp Feature: domain Description: eMpr Location: 2217-28 71 bp Feature: gene Location: 3107-3541 bp Feature: gene Location: 3728-4318 bp Feature: domain Description: RVT_N Location: 3782-4025 bp Feature: domain Description: RVT_N Location: 378 2-4025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4076-4259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4076-4259 bp Feature: gene Location: 4354-4500 bp Feature: gene Location: 4853-5071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT eMpr (COG3591), RVT_N (pfam13655), RVT-GII

Seq: PVWG01000077.1 Phormidesmis priestleyi ULC007 NODE_77_length_10849_cov_315.529_ID_17869, whole genome shotgun sequence (10849 bp)
Overview 1 RT 1: 3680-8854 bp Neighborhood of RT #1 [3680, 9093] Spo0J DUF1016_N RVT-GII Intron_maturas2 HNHc YhcG_C HsdM HsdM Feature: gene Location: 3680-4588 bp Feature: domain Description: Spo0J Location: 3764-4562 bp Feature: domain Description: Spo0J Location: 3764-4562 bp Feature: gene Location: 4731-5357 bp Feature: domain Description: DUF1016_N Location: 4779-5187 bp Feature: domain Description: DUF1016_N Location: 4779 -5187 bp Feature: gene Location: 5844-7646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6105-6900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6105-69 00 bp Feature: domain Description: Intron_maturas2 Location: 7002-7245 bp Feature: domain Description: Intron_maturas2 Location: 7002-7245 bp Feature: domain Description: HNHc Note: nucleases Location: 7410-7584 bp Feature: domain Description: HNHc Note: nucleases Location: 7410-7584 bp Feature: gene Location: 7737-8219 bp Feature: domain Description: YhcG_C Location: 7743-8160 bp Feature: domain Description: YhcG_C Location: 7743-8160 bp Feature: gene Location: 8275-9093 bp Feature: domain Description: HsdM Location: 8290-8410 bp Feature: domain Description: HsdM Location: 829 0-8410 bp Feature: domain Description: HsdM Location: 8545-8854 bp Feature: domain Description: HsdM Location: 8545-8854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0J (COG1475), DUF1016_N (pfam17761), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YhcG_C, HsdM (COG0286)

Seq: PVWG01000091.1 Phormidesmis priestleyi ULC007 NODE_92_length_4370_cov_95.6434_ID_17899, whole genome shotgun sequence (4370 bp)
Overview 1 RT 1: 206-1952 bp Neighborhood of RT #1 [206, 1952] RVT-GII GIIM Feature: gene Location: 206-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-530 bp Feature: domain Description: GIIM Note: maturase Location: 611-815 bp Feature: domain Description: GIIM Note: maturase Location: 611-815 bp Feature: gene Location: 1222-1461 bp Feature: gene Location: 1698-1952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)