myRT

myRT report for GCA_003003725.1_ASM300372v1

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Seq: PVWI01000024.1 Filamentous cyanobacterium Phorm 6 NODE_26_length_36446_cov_6.99513_ID_61883, whole genome shotgun sequence (36446 bp)
Overview 1 RT 1: 19622-24530 bp Neighborhood of RT #1 [19622, 24544] RRXRR McrA RVT_N RVT-GII GIIM HNH RRXRR Feature: gene Location: 19622-20803 bp Feature: gene Location: 20851-22125 bp Feature: domain Description: RRXRR Location: 21013-21385 bp Feature: domain Description: RRXRR Location: 21 01 3-21 385 bp Feature: domain Description: McrA Location: 21421-21664 bp Feature: domain Description: McrA Location: 21 421 -21 664 bp Feature: gene Location: 22112-23824 bp Feature: domain Description: RVT_N Location: 22166-22409 bp Feature: domain Description: RVT_N Location: 221 66-22409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22460-23141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22460-231 41 bp Feature: domain Description: GIIM Note: maturase Location: 23210-23429 bp Feature: domain Description: GIIM Note: maturase Location: 2321 0-23429 bp Feature: domain Description: HNH Note: nucleases Location: 23681-23813 bp Feature: domain Description: HNH Note: nucleases Location: 23681 -2381 3 bp Feature: gene Location: 23831-24013 bp Feature: gene Location: 24401-24544 bp Feature: domain Description: RRXRR Location: 24419-24530 bp Feature: domain Description: RRXRR Location: 2441 9-24530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RRXRR (pfam14239), McrA (COG4058), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: PVWI01000026.1 Filamentous cyanobacterium Phorm 6 NODE_28_length_35840_cov_5.23779_ID_64029, whole genome shotgun sequence (35840 bp)
Overview 1 RT 1: 25730-30045 bp Neighborhood of RT #1 [25730, 30161] CE4_NodB_like_5s_6s RVT-Retrons Rnc NYN Feature: gene Location: 25730-25978 bp Feature: gene Location: 25989-26909 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 26349-26838 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 2 6349-2 6838 bp Feature: gene Location: 27252-28649 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27798-28416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 7798-2 8416 bp Feature: gene Location: 28687-29400 bp Feature: domain Description: Rnc Location: 28732-29386 bp Feature: domain Description: Rnc Location: 2 8732 -2 9386 bp Feature: gene Location: 29607-30161 bp Feature: domain Description: NYN Location: 29658-30045 bp Feature: domain Description: NYN Location: 2 9658-30045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CE4_NodB_like_5s_6s (cd10918), RVT-Retrons, Rnc (COG0571), NYN (pfam01936)

Seq: PVWI01000051.1 Filamentous cyanobacterium Phorm 6 NODE_57_length_28177_cov_8.29534_ID_62993, whole genome shotgun sequence (28177 bp)
Overview 1 RT 1: 14877-20775 bp Neighborhood of RT #1 [14877, 20775] RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII GIIM McrA Feature: gene Location: 14877-15443 bp Feature: gene Location: 16084-16272 bp Feature: gene Location: 16196-17842 bp Feature: domain Description: RVT_N Location: 16247-16490 bp Feature: domain Description: RVT_N Location: 16247-16490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16532-17144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653 2-17144 bp Feature: domain Description: GIIM Note: maturase Location: 17201-17429 bp Feature: domain Description: GIIM Note: maturase Location: 17201-17429 bp Feature: domain Description: HNHc Note: nucleases Location: 17654-17813 bp Feature: domain Description: HNHc Note: nucleases Location: 17654-17813 bp Feature: gene Location: 18530-20242 bp Feature: domain Description: RVT_N Location: 18572-18818 bp Feature: domain Description: RVT_N Location: 18572-18818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18860-19529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18860-19529 bp Feature: domain Description: GIIM Note: maturase Location: 19628-19829 bp Feature: domain Description: GIIM Note: maturase Location: 19628-19829 bp Feature: domain Description: McrA Location: 19931-20204 bp Feature: domain Description: McrA Location: 1993 1-20204 bp Feature: gene Location: 20379-20528 bp Feature: gene Location: 20488-20775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), McrA (COG4058)

Seq: PVWI01000052.1 Filamentous cyanobacterium Phorm 6 NODE_59_length_27674_cov_5.20752_ID_79194, whole genome shotgun sequence (27674 bp)
Overview 1 RT 1: 5432-13911 bp Neighborhood of RT #1 [5432, 13991] Tar Tar CheW RVT_N RVT-GII McrA OrfB_Zn_ribbon DUF4388 CheY Feature: gene Location: 5432-8542 bp Feature: domain Description: Tar Location: 7271-7520 bp Feature: domain Description: Tar Location: 7271-7520 bp Feature: domain Description: Tar Location: 7538-8522 bp Feature: domain Description: Tar Location: 7538-8522 bp Feature: gene Location: 8685-9221 bp Feature: domain Description: CheW Location: 8781-9207 bp Feature: domain Description: CheW Location: 8781-9207 bp Feature: gene Location: 9837-11414 bp Feature: domain Description: RVT_N Location: 9873-10107 bp Feature: domain Description: RVT_N Location: 9873-10107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10170-10827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10170-10827 bp Feature: domain Description: McrA Location: 11058-11406 bp Feature: domain Description: McrA Location: 11058-114 06 bp Feature: gene Location: 12317-12490 bp Feature: domain Description: OrfB_Zn_ribbon Location: 12320-12476 bp Feature: domain Description: OrfB_Zn_ribbon Location: 12320-124 76 bp Feature: gene Location: 12753-13991 bp Feature: domain Description: DUF4388 Location: 12759-13275 bp Feature: domain Description: DUF4 388 Location: 12759-13275 bp Feature: domain Description: CheY Location: 13551-13911 bp Feature: domain Description: CheY Location: 13551-13911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT_N (pfam13655), RVT-GII, McrA (COG4058), OrfB_Zn_ribbon (pfam07282), DUF4388 (pfam14332), CheY (COG0784)

Seq: PVWI01000004.1 Filamentous cyanobacterium Phorm 6 NODE_5_length_52921_cov_9.11636_ID_62083, whole genome shotgun sequence (52921 bp)
Overview 1 RT 1: 10932-15208 bp Neighborhood of RT #1 [10932, 15243] Prok-E2_E ThiF_MoeB_HesA_family RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 10932-11417 bp Feature: domain Description: Prok-E2_E Location: 11067-11193 bp Feature: domain Description: Prok-E2_E Location: 11067-11193 bp Feature: gene Location: 11457-12830 bp Feature: domain Description: ThiF_MoeB_HesA_family Location: 12027-12432 bp Feature: domain Description: ThiF_MoeB_HesA_family Location: 12027-12432 bp Feature: gene Location: 12861-13853 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13116-13722 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13116-13722 bp Feature: gene Location: 13892-14956 bp Feature: domain Description: Cas1_I-II-III Location: 13961-14915 bp Feature: domain Description: Cas1_I-II-III Location: 13961-14915 bp Feature: gene Location: 14971-15243 bp Feature: domain Description: Cas2_I_II_III Location: 14977-15208 bp Feature: domain Description: Cas2_I_II_III Location: 14977-15 208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prok-E2_E (pfam14462), ThiF_MoeB_HesA_family (cd00757), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: PVWI01000304.1 Filamentous cyanobacterium Phorm 6 NODE_676_length_7209_cov_6.0767_ID_88572, whole genome shotgun sequence (7209 bp)
Overview 1 RT 1: 3-7022 bp Neighborhood of RT #1 [3, 7030] R_switched_YkoY RVT-UG25 pcrA DEDDh pcrA Feature: gene Location: 3-131 bp Feature: gene Location: 220-1005 bp Feature: domain Description: R_switched_YkoY Location: 292-823 bp Feature: domain Description: R_switched_YkoY Location: 292-823 bp Feature: gene Location: 1524-4580 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3018-3414 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3018-3414 bp Feature: gene Location: 4577-7030 bp Feature: domain Description: pcrA Location: 4583-5912 bp Feature: domain Description: pcrA Location: 4583-5912 bp Feature: domain Description: DEDDh Location: 5972-6431 bp Feature: domain Description: DEDDh Location: 5972-6 431 bp Feature: domain Description: pcrA Location: 6467-7022 bp Feature: domain Description: pcrA Location: 6 46 7-7022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R_switched_YkoY (TIGR03716), RVT-UG25, pcrA (TIGR01073), DEDDh (cd06127)

Seq: PVWI01000355.1 Filamentous cyanobacterium Phorm 6 NODE_921_length_5764_cov_5.91577_ID_97903, whole genome shotgun sequence (5764 bp)
Overview 1 RT 1: 221-3124 bp Neighborhood of RT #1 [221, 3351] RVT_N RVT-GII RVT-GII RVT-GII GIIM McrA InsQ HTH_OrfB_IS605 Feature: gene Location: 221-349 bp Feature: gene Location: 623-1132 bp Feature: domain Description: RVT_N Location: 659-905 bp Feature: domain Description: RVT_N Location: 659-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956-1058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956-1058 bp Feature: gene Location: 1012-2136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1060-1381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1060-1381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1384-1552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1384-1552 bp Feature: domain Description: GIIM Note: maturase Location: 1609-1768 bp Feature: domain Description: GIIM Note: maturase Location: 1609-17 68 bp Feature: domain Description: McrA Location: 1807-2107 bp Feature: domain Description: McrA Location: 1807 -2107 bp Feature: gene Location: 2273-2947 bp Feature: domain Description: InsQ Location: 2309-2930 bp Feature: domain Description: InsQ Location: 2309-2930 bp Feature: gene Location: 2986-3351 bp Feature: domain Description: HTH_OrfB_IS605 Location: 2989-3124 bp Feature: domain Description: HTH_OrfB_IS605 Location: 2989-3124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), InsQ (COG0675), HTH_OrfB_IS605 (pfam12323)