myRT

myRT report for GCA_003003775.1_ASM300377v1

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Seq: PVWJ01000047.1 Merismopedia glauca CCAP 1448/3 NODE_139_length_37506_cov_6.52946_ID_43458, whole genome shotgun sequence (37506 bp)
Overview 1 RT 1: 30736-37276 bp Neighborhood of RT #1 [30736, 37359] STKc_PknB_like GDE_N GDE_C RVT-GII McrA DUF5372 PinE Zn_ribbon_recom Feature: gene Location: 30736-32169 bp Feature: domain Description: STKc_PknB_like Location: 30787-31567 bp Feature: domain Description: STKc_PknB_like Location: 30787-31 567 bp Feature: gene Location: 32265-34241 bp Feature: domain Description: GDE_N Location: 32322-32979 bp Feature: domain Description: GDE_N Location: 32322-32979 bp Feature: domain Description: GDE_C Location: 33129-34218 bp Feature: domain Description: GDE_C Location: 331 29-3421 8 bp Feature: gene Location: 34371-35636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34389-35007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34389-35007 bp Feature: domain Description: McrA Location: 35247-35607 bp Feature: domain Description: McrA Location: 35247-35607 bp Feature: gene Location: 35690-36100 bp Feature: domain Description: DUF5372 Location: 35699-35897 bp Feature: domain Description: DUF5372 Location: 35699-35897 bp Feature: gene Location: 36100-37359 bp Feature: domain Description: PinE Location: 36142-36841 bp Feature: domain Description: PinE Location: 361 42-36841 bp Feature: domain Description: Zn_ribbon_recom Location: 37099-37276 bp Feature: domain Description: Zn_ribbon_recom Location: 37099-37276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), GDE_N (pfam12439), GDE_C (pfam06202), RVT-GII, McrA (COG4058), DUF5372 (pfam17342), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: PVWJ01000049.1 Merismopedia glauca CCAP 1448/3 NODE_141_length_36787_cov_6.33893_ID_41098, whole genome shotgun sequence (36787 bp)
Overview 1 RT 1: 21303-26867 bp Neighborhood of RT #1 [21303, 26867] YfmG Avd_like RVT-DGRs YfmG Feature: gene Location: 21303-23906 bp Feature: domain Description: YfmG Location: 23058-23886 bp Feature: domain Description: YfmG Location: 2 3058-2 3886 bp Feature: gene Location: 24005-24349 bp Feature: domain Description: Avd_like Location: 24023-24329 bp Feature: domain Description: Avd_like Location: 2 402 3-2 432 9 bp Feature: gene Location: 24346-25407 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24556-25195 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 4556-2 5195 bp Feature: gene Location: 25745-26581 bp Feature: domain Description: YfmG Location: 25790-26561 bp Feature: domain Description: YfmG Location: 2 5790-2 6561 bp Feature: gene Location: 26664-26867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: PVWJ01000245.1 Merismopedia glauca CCAP 1448/3 NODE_2031_length_2319_cov_16.4411_ID_285946, whole genome shotgun sequence (2319 bp)
Overview 1 RT 1: 108-2296 bp Neighborhood of RT #1 [108, 2296] RVT_N RVT-GII McrA Feature: gene Location: 108-1679 bp Feature: domain Description: RVT_N Location: 141-384 bp Feature: domain Description: RVT_N Location: 141-3 84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 8-1086 bp Feature: domain Description: McrA Location: 1323-1656 bp Feature: domain Description: McrA Location: 13 23 -1656 bp Feature: gene Location: 1940-2296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: PVWJ01000249.1 Merismopedia glauca CCAP 1448/3 NODE_2157_length_2152_cov_14.2227_ID_285912, whole genome shotgun sequence (2152 bp)
Overview 1 RT 1: 90-1807 bp Neighborhood of RT #1 [90, 1807] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 90-1595 bp Feature: domain Description: RVT_N Location: 129-369 bp Feature: domain Description: RVT_N Location: 129-369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 26-84 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1020 bp Feature: domain Description: McrA Location: 1263-1575 bp Feature: domain Description: McrA Location: 1263-1575 bp Feature: gene Location: 1622-1807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: PVWJ01000073.1 Merismopedia glauca CCAP 1448/3 NODE_227_length_25843_cov_6.34394_ID_40131, whole genome shotgun sequence (25843 bp)
Overview 1 RT 1: 8279-11581 bp Neighborhood of RT #1 [8279, 11616] CDO_I RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 8279-8731 bp Feature: domain Description: CDO_I Location: 8363-8720 bp Feature: domain Description: CDO_I Location: 8363-8720 bp Feature: gene Location: 8811-9080 bp Feature: gene Location: 9251-10171 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 9458-10064 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 945 8-10064 bp Feature: gene Location: 10327-11331 bp Feature: domain Description: Cas1_I-II-III Location: 10336-11293 bp Feature: domain Description: Cas1_I-II-III Location: 10336-11293 bp Feature: gene Location: 11341-11616 bp Feature: domain Description: Cas2_I_II_III Location: 11353-11581 bp Feature: domain Description: Cas2_I_II_III Location: 1135 3-115 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CDO_I (pfam05995), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: PVWJ01000096.1 Merismopedia glauca CCAP 1448/3 NODE_297_length_20255_cov_6.91947_ID_53932, whole genome shotgun sequence (20255 bp)
Overview 1 RT 1: 4054-10587 bp Neighborhood of RT #1 [4054, 10598] MoxR YfmG RVT-DGRs YfmG YfmG Feature: gene Location: 4054-5109 bp Feature: domain Description: MoxR Location: 4186-4933 bp Feature: domain Description: MoxR Location: 4186 -4933 bp Feature: gene Location: 5102-8050 bp Feature: domain Description: YfmG Location: 7253-8033 bp Feature: domain Description: YfmG Location: 7253-8033 bp Feature: gene Location: 8565-9665 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8775-9417 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8775-9417 bp Feature: gene Location: 9695-9886 bp Feature: domain Description: YfmG Location: 9719-9824 bp Feature: domain Description: YfmG Location: 9719-9824 bp Feature: gene Location: 9987-10598 bp Feature: domain Description: YfmG Location: 10077-10587 bp Feature: domain Description: YfmG Location: 10077-10587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), YfmG (COG1262), RVT-DGRs

Seq: PVWJ01000099.1 Merismopedia glauca CCAP 1448/3 NODE_306_length_19446_cov_6.52527_ID_51307, whole genome shotgun sequence (19446 bp)
Overview 1 RT 1: 130-1572 bp Neighborhood of RT #1 [130, 1613] RVT-AbiP2 PIN_VapC4-5_FitB-like Feature: gene Location: 130-957 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 133-343 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 133-343 bp Feature: gene Location: 976-1125 bp Feature: gene Location: 1158-1613 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1239-1572 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 1239-157 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, PIN_VapC4-5_FitB-like (cd18754)

Seq: PVWJ01000139.1 Merismopedia glauca CCAP 1448/3 NODE_445_length_13339_cov_7.44028_ID_49848, whole genome shotgun sequence (13339 bp)
Overview 1 RT 1: 5837-13094 bp Neighborhood of RT #1 [5837, 13171] M3A_DCP PDDEXK_7 RVT-Retrons AAA_5 Uma2 Feature: gene Location: 5837-7918 bp Feature: domain Description: M3A_DCP Location: 5915-7907 bp Feature: domain Description: M3A_DCP Location: 5915-7907 bp Feature: gene Location: 7998-10088 bp Feature: domain Description: PDDEXK_7 Location: 9153-9468 bp Feature: domain Description: PDDEXK_7 Location: 9153-9468 bp Feature: gene Location: 10100-12361 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10214-10865 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10214-108 65 bp Feature: domain Description: AAA_5 Location: 11336-11636 bp Feature: domain Description: AAA_5 Location: 11336-11636 bp Feature: gene Location: 12572-13171 bp Feature: domain Description: Uma2 Location: 12608-13094 bp Feature: domain Description: Uma2 Location: 12608 -13094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M3A_DCP (cd06456), PDDEXK_7 (pfam04411), RVT-Retrons, AAA_5 (pfam07728), Uma2 (pfam05685)

Seq: PVWJ01000186.1 Merismopedia glauca CCAP 1448/3 NODE_792_length_6924_cov_7.59588_ID_64012, whole genome shotgun sequence (6924 bp)
Overview 1 RT 1: 985-6851 bp Neighborhood of RT #1 [985, 6859] KOG0399 RVT-AbiP2 Feature: gene Location: 985-1209 bp Feature: gene Location: 1361-6064 bp Feature: domain Description: KOG0399 Location: 1463-6050 bp Feature: domain Description: KOG039 9 Location: 1463-6050 bp Feature: gene Location: 6197-6859 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6653-6851 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6653-6851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0399 (KOG0399, Glutamate synthase ), RVT-AbiP2

Seq: PVWJ01000029.1 Merismopedia glauca CCAP 1448/3 NODE_93_length_45285_cov_6.83813_ID_34772, whole genome shotgun sequence (45285 bp)
Overview 1 RT 1: 70-7009 bp Neighborhood of RT #1 [70, 7020] DUF87 RVT-Retrons GT4_CapM-like M20_Acy1_YhaA-like Feature: gene Location: 70-1281 bp Feature: domain Description: DUF87 Location: 487-937 bp Feature: domain Description: DUF87 Location: 487-937 bp Feature: gene Location: 1278-2369 bp Feature: gene Location: 3028-4431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3574-4195 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3574-4195 bp Feature: gene Location: 4608-5729 bp Feature: domain Description: GT4_CapM-like Location: 4617-5709 bp Feature: domain Description: GT4_CapM-like Location: 4617-5709 bp Feature: gene Location: 5809-7020 bp Feature: domain Description: M20_Acy1_YhaA-like Location: 5857-7009 bp Feature: domain Description: M20_Acy1_YhaA-like Location: 5857-7009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF87 (pfam01935), RVT-Retrons, GT4_CapM-like (cd03808), M20_Acy1_YhaA-like (cd08021)