myRT

myRT report for GCA_003003795.1_ASM300379v1

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Seq: PVWK01000128.1 Leptolyngbya frigida ULC18 1184, whole genome shotgun sequence (3175 bp)
Overview 1 RT 1: 414-3173 bp Neighborhood of RT #1 [414, 3173] RVT_N RVT-GII GIIM McrA Feature: gene Location: 414-968 bp Feature: gene Location: 994-1125 bp Feature: gene Location: 1199-2929 bp Feature: domain Description: RVT_N Location: 1229-1475 bp Feature: domain Description: RVT_N Location: 1 229-1 475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1520-2156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 520-21 56 bp Feature: domain Description: GIIM Note: maturase Location: 2246-2480 bp Feature: domain Description: GIIM Note: maturase Location: 2246-2480 bp Feature: domain Description: McrA Location: 2546-2846 bp Feature: domain Description: McrA Location: 2546-2846 bp Feature: gene Location: 2955-3173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: PVWK01000036.1 Leptolyngbya frigida ULC18 1386, whole genome shotgun sequence (2564 bp)
Overview 1 RT 1: 242-2495 bp Neighborhood of RT #1 [242, 2521] RVT_N RVT-GII GIIM HNH group_II_RT_mat Feature: gene Location: 242-1162 bp Feature: domain Description: RVT_N Location: 275-521 bp Feature: domain Description: RVT_N Location: 2 75-52 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1160 bp Feature: gene Location: 1238-1954 bp Feature: domain Description: GIIM Note: maturase Location: 1331-1553 bp Feature: domain Description: GIIM Note: maturase Location: 1331-1553 bp Feature: domain Description: HNH Note: nucleases Location: 1766-1904 bp Feature: domain Description: HNH Note: nucleases Location: 1766-1904 bp Feature: gene Location: 2234-2521 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2342-2495 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 342 -2 495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), group_II_RT_mat (TIGR04416)

Seq: PVWK01000051.1 Leptolyngbya frigida ULC18 193, whole genome shotgun sequence (41726 bp)
Overview 1 RT 1: 2-1292 bp Neighborhood of RT #1 [2, 1292] RVT-GII Feature: gene Location: 2-502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-443 bp Feature: gene Location: 623-859 bp Feature: gene Location: 987-1292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PVWK01000016.1 Leptolyngbya frigida ULC18 223, whole genome shotgun sequence (32748 bp)
Overview 1 RT 1: 3012-7549 bp Neighborhood of RT #1 [3012, 7566] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 3012-3428 bp Feature: gene Location: 3927-4739 bp Feature: domain Description: YfmG Location: 3996-4722 bp Feature: domain Description: YfmG Location: 3996-4 722 bp Feature: gene Location: 5078-6190 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5288-5930 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5288-5930 bp Feature: gene Location: 6187-6534 bp Feature: domain Description: Avd_like Location: 6205-6511 bp Feature: domain Description: Avd_like Location: 6205-6511 bp Feature: gene Location: 6709-7566 bp Feature: domain Description: YfmG Location: 6754-7549 bp Feature: domain Description: YfmG Location: 6754 -754 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: PVWK01000145.1 Leptolyngbya frigida ULC18 326, whole genome shotgun sequence (18332 bp)
Overview 1 RT 1: 1-4472 bp Neighborhood of RT #1 [1, 4472] Isochorismatase RVT-UG12 PRK10764 Feature: gene Location: 1-267 bp Feature: gene Location: 269-967 bp Feature: domain Description: Isochorismatase Location: 407-947 bp Feature: domain Description: Isochorismatase Location: 407-947 bp Feature: gene Location: 1135-2712 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1513-1939 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 15 13-1939 bp Feature: gene Location: 3027-4028 bp Feature: domain Description: PRK10764 Location: 3072-4005 bp Feature: domain Description: PRK10764 Location: 3072-4005 bp Feature: gene Location: 4083-4472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Isochorismatase (pfam00857), RVT-UG12, PRK10764 (potassium-tellurite ethidium and proflavin transporter; Provisional)