myRT

myRT report for GCA_003003845.1_ASM300384v1

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Seq: PVWO01000045.1 Chamaesiphon polymorphus CCALA 037 NODE_108_length_20460_cov_6.31546_ID_68486, whole genome shotgun sequence (20460 bp)
Overview 1 RT 1: 1173-5933 bp Neighborhood of RT #1 [1173, 6004] cztS_silS_copS RVT_N RVT-GII GIIM McrA BaeS Feature: gene Location: 1173-2456 bp Feature: domain Description: cztS_silS_copS Location: 1338-2403 bp Feature: domain Description: cztS_silS_copS Location: 1 338-2403 bp Feature: gene Location: 2690-2890 bp Feature: gene Location: 3179-4996 bp Feature: domain Description: RVT_N Location: 3212-3455 bp Feature: domain Description: RVT_N Location: 321 2-3455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3500-4196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3500-41 96 bp Feature: domain Description: GIIM Note: maturase Location: 4298-4529 bp Feature: domain Description: GIIM Note: maturase Location: 4298-4529 bp Feature: domain Description: McrA Location: 4616-4895 bp Feature: domain Description: McrA Location: 461 6-4895 bp Feature: gene Location: 5217-5375 bp Feature: gene Location: 5600-6004 bp Feature: domain Description: BaeS Location: 5684-5933 bp Feature: domain Description: BaeS Location: 5684-5933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cztS_silS_copS (TIGR01386), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), BaeS (COG0642)

Seq: PVWO01000077.1 Chamaesiphon polymorphus CCALA 037 NODE_156_length_16590_cov_5.37177_ID_66029, whole genome shotgun sequence (16590 bp)
Overview 1 RT 1: 13715-16507 bp Neighborhood of RT #1 [13715, 16536] BtuF CpeT RVT-GII GIIM HNHc Feature: gene Location: 13715-14644 bp Feature: domain Description: BtuF Location: 13739-14579 bp Feature: domain Description: BtuF Location: 13739-14579 bp Feature: gene Location: 14710-15321 bp Feature: domain Description: CpeT Location: 14737-15265 bp Feature: domain Description: CpeT Location: 14737-152 65 bp Feature: gene Location: 15544-16536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15568-15838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15568-15838 bp Feature: domain Description: GIIM Note: maturase Location: 15898-16123 bp Feature: domain Description: GIIM Note: maturase Location: 15898-1612 3 bp Feature: domain Description: HNHc Note: nucleases Location: 16345-16507 bp Feature: domain Description: HNHc Note: nucleases Location: 16345-16507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BtuF (cd01144), CpeT (pfam06206), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PVWO01000112.1 Chamaesiphon polymorphus CCALA 037 NODE_223_length_13414_cov_12.6444_ID_67756, whole genome shotgun sequence (13414 bp)
Overview 1 RT 1: 6853-13331 bp Neighborhood of RT #1 [6853, 13360] YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x RHS_repeat YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x RHS_repeat YD_repeat_2x YD_repeat_2x YD_repeat_2x Rhs_assc_core InsQ RVT-GII GIIM HNHc Feature: gene Location: 6853-10890 bp Feature: domain Description: YD_repeat_2x Location: 6970-7066 bp Feature: domain Description: YD_repeat_2x Location: 6970-7066 bp Feature: domain Description: YD_repeat_2x Location: 7081-7204 bp Feature: domain Description: YD_repeat_2x Location: 7081-7204 bp Feature: domain Description: YD_repeat_2x Location: 7207-7324 bp Feature: domain Description: YD_repeat_2x Location: 7207-73 24 bp Feature: domain Description: YD_repeat_2x Location: 7393-7483 bp Feature: domain Description: YD_repeat_2x Location: 73 93 -7483 bp Feature: domain Description: YD_repeat_2x Location: 7543-7633 bp Feature: domain Description: YD_repeat_2x Location: 7543 -763 3 bp Feature: domain Description: YD_repeat_2x Location: 7654-7735 bp Feature: domain Description: YD_repeat_2x Location: 7654-773 5 bp Feature: domain Description: YD_repeat_2x Location: 7738-7843 bp Feature: domain Description: YD_repeat_2x Location: 773 8-7843 bp Feature: domain Description: YD_repeat_2x Location: 7888-8011 bp Feature: domain Description: YD_repeat_2x Location: 7888-8011 bp Feature: domain Description: YD_repeat_2x Location: 8014-8119 bp Feature: domain Description: YD_repeat_2x Location: 8014-8119 bp Feature: domain Description: RHS_repeat Location: 8164-8242 bp Feature: domain Description: RHS_repeat Location: 8164-8242 bp Feature: domain Description: YD_repeat_2x Location: 8290-8377 bp Feature: domain Description: YD_repeat_2x Location: 8290-83 77 bp Feature: domain Description: YD_repeat_2x Location: 8410-8479 bp Feature: domain Description: YD_repeat_2x Location: 8410-8479 bp Feature: domain Description: YD_repeat_2x Location: 8482-8605 bp Feature: domain Description: YD_repeat_2x Location: 8482-8605 bp Feature: domain Description: YD_repeat_2x Location: 8608-8707 bp Feature: domain Description: YD_repeat_2x Location: 8608-8707 bp Feature: domain Description: YD_repeat_2x Location: 8797-8884 bp Feature: domain Description: YD_repeat_2x Location: 8797-8884 bp Feature: domain Description: YD_repeat_2x Location: 8902-8977 bp Feature: domain Description: YD_repeat_2x Location: 8902-8977 bp Feature: domain Description: YD_repeat_2x Location: 8983-9097 bp Feature: domain Description: YD_repeat_2x Location: 8983 -9097 bp Feature: domain Description: YD_repeat_2x Location: 9106-9217 bp Feature: domain Description: YD_repeat_2x Location: 9106-9217 bp Feature: domain Description: RHS_repeat Location: 9232-9334 bp Feature: domain Description: RHS_repeat Location: 923 2-93 3 4 bp Feature: domain Description: YD_repeat_2x Location: 9337-9409 bp Feature: domain Description: YD_repeat_2x Location: 93 3 7-9409 bp Feature: domain Description: YD_repeat_2x Location: 9508-9583 bp Feature: domain Description: YD_repeat_2x Location: 9508-9583 bp Feature: domain Description: YD_repeat_2x Location: 9628-9730 bp Feature: domain Description: YD_repeat_2x Location: 9628-973 0 bp Feature: domain Description: Rhs_assc_core Location: 9943-10183 bp Feature: domain Description: Rhs_assc_core Location: 9943 -10183 bp Feature: gene Location: 10994-12106 bp Feature: domain Description: InsQ Location: 10997-12095 bp Feature: domain Description: InsQ Location: 10997-12095 bp Feature: gene Location: 12365-13360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12389-12662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 89-12662 bp Feature: domain Description: GIIM Note: maturase Location: 12719-12947 bp Feature: domain Description: GIIM Note: maturase Location: 12719-12947 bp Feature: domain Description: HNHc Note: nucleases Location: 13169-13331 bp Feature: domain Description: HNHc Note: nucleases Location: 13 169-13 3 3 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YD_repeat_2x (TIGR01643), RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696), InsQ (COG0675), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PVWO01000592.1 Chamaesiphon polymorphus CCALA 037 NODE_2285_length_3206_cov_16.2777_ID_134674, whole genome shotgun sequence (3206 bp)
Overview 1 RT 1: 52-2148 bp Neighborhood of RT #1 [52, 2148] RVT_N RVT-GII Feature: gene Location: 52-798 bp Feature: domain Description: RVT_N Location: 103-346 bp Feature: domain Description: RVT_N Location: 103-34 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-772 bp Feature: gene Location: 1400-1750 bp Feature: gene Location: 1789-2148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: PVWO01000130.1 Chamaesiphon polymorphus CCALA 037 NODE_251_length_12636_cov_5.08918_ID_70422, whole genome shotgun sequence (12636 bp)
Overview 1 RT 1: 8056-12559 bp Neighborhood of RT #1 [8056, 12585] YSH1 RVT_N RVT-GII Feature: gene Location: 8056-8493 bp Feature: gene Location: 8607-11201 bp Feature: domain Description: YSH1 Location: 9417-10668 bp Feature: domain Description: YSH1 Location: 9417-10668 bp Feature: gene Location: 11848-12585 bp Feature: domain Description: RVT_N Location: 11881-12124 bp Feature: domain Description: RVT_N Location: 11881-12124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12178-12559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12178-125 5 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YSH1 (COG1236), RVT_N (pfam13655), RVT-GII

Seq: PVWO01000691.1 Chamaesiphon polymorphus CCALA 037 NODE_3308_length_2382_cov_71.3957_ID_508098, whole genome shotgun sequence (2382 bp)
Overview 1 RT 1: 609-2247 bp Neighborhood of RT #1 [609, 2273] RVT-GII KOG4768 Feature: gene Location: 609-2273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891-1575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891-1575 bp Feature: domain Description: KOG4768 Location: 1722-2247 bp Feature: domain Description: KOG476 8 Location: 1722-2247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: PVWO01000179.1 Chamaesiphon polymorphus CCALA 037 NODE_355_length_10426_cov_4.92821_ID_71802, whole genome shotgun sequence (10426 bp)
Overview 1 RT 1: 3227-8252 bp Neighborhood of RT #1 [3227, 8314] CitB Zn-ribbon_8 Zn-ribbon_8 RVT-Retrons PAS PRK13837 DDE_3 Feature: gene Location: 3227-3859 bp Feature: domain Description: CitB Location: 3233-3848 bp Feature: domain Description: CitB Location: 3233-3848 bp Feature: gene Location: 3957-4226 bp Feature: domain Description: Zn-ribbon_8 Location: 4059-4116 bp Feature: domain Description: Zn-ribbon_8 Location: 4059-4116 bp Feature: domain Description: Zn-ribbon_8 Location: 4164-4209 bp Feature: domain Description: Zn-ribbon_8 Location: 4164-4209 bp Feature: gene Location: 4625-6040 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5171-5792 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 517 1-57 92 bp Feature: gene Location: 6218-7789 bp Feature: domain Description: PAS Location: 6311-6593 bp Feature: domain Description: PAS Location: 6311-6593 bp Feature: domain Description: PRK13837 Location: 6599-7787 bp Feature: domain Description: PRK13837 Location: 6599-7 7 87 bp Feature: gene Location: 7814-8314 bp Feature: domain Description: DDE_3 Location: 7850-8252 bp Feature: domain Description: DDE_3 Location: 7 850-8252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitB (TIGR02484), Zn-ribbon_8 (pfam09723), RVT-Retrons, PAS (smart00091), PRK13837 (two-component system VirA-like sensor kinase), DDE_3 (pfam13358)

Seq: PVWO01000024.1 Chamaesiphon polymorphus CCALA 037 NODE_75_length_25311_cov_4.79821_ID_62367, whole genome shotgun sequence (25260 bp)
Overview 1 RT 1: 3996-8875 bp Neighborhood of RT #1 [3996, 8875] TIGR03985 NUDIX RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 3996-5390 bp Feature: domain Description: TIGR03985 Location: 4635-5379 bp Feature: domain Description: TIGR0398 5 Location: 4635-5379 bp Feature: gene Location: 5475-6014 bp Feature: domain Description: NUDIX Location: 5655-5829 bp Feature: domain Description: NUDIX Location: 5655-58 29 bp Feature: gene Location: 6150-8207 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6360-6966 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6360-6966 bp Feature: domain Description: Cas1_I-II-III Location: 7212-8172 bp Feature: domain Description: Cas1_I-II-III Location: 7212-8 172 bp Feature: gene Location: 8274-8549 bp Feature: domain Description: Cas2_I_II_III Location: 8286-8511 bp Feature: domain Description: Cas2_I_II_III Location: 8 28 6-8 511 bp Feature: gene Location: 8702-8875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03985 (CRISPR-associated protein, TIGR03985 family), NUDIX (pfam00293), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: PVWO01000326.1 Chamaesiphon polymorphus CCALA 037 NODE_767_length_6812_cov_9.08745_ID_95868, whole genome shotgun sequence (6812 bp)
Overview 1 RT 1: 52-2376 bp Neighborhood of RT #1 [52, 2376] RVT_N RVT-GII Feature: gene Location: 52-798 bp Feature: domain Description: RVT_N Location: 103-346 bp Feature: domain Description: RVT_N Location: 103-346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-772 bp Feature: gene Location: 1460-2104 bp Feature: gene Location: 2143-2376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: PVWO01000039.1 Chamaesiphon polymorphus CCALA 037 NODE_96_length_21872_cov_5.02276_ID_63401, whole genome shotgun sequence (21872 bp)
Overview 1 RT 1: 19287-21795 bp Neighborhood of RT #1 [19287, 21821] PRK05912 RVT_N RVT-GII Feature: gene Location: 19287-20525 bp Feature: domain Description: PRK05912 Location: 19341-20520 bp Feature: domain Description: PRK05912 Location: 19341-20520 bp Feature: gene Location: 20572-20763 bp Feature: gene Location: 21090-21821 bp Feature: domain Description: RVT_N Location: 21126-21369 bp Feature: domain Description: RVT_N Location: 21126-21369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21423-21795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21423-21795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05912 (tyrosyl-tRNA synthetase; Validated), RVT_N (pfam13655), RVT-GII

Seq: PVWO01000040.1 Chamaesiphon polymorphus CCALA 037 NODE_97_length_21766_cov_7.7578_ID_63149, whole genome shotgun sequence (21766 bp)
Overview 1 RT 1: 52-2139 bp 2 RT 2: 19350-21638 bp Neighborhood of RT #1 [52, 2174] RVT_N RVT-GII PemK_toxin Neighborhood of RT #2 [19350, 21712] xerC RVT-GII McrA Feature: gene Location: 52-783 bp Feature: domain Description: RVT_N Location: 88-334 bp Feature: domain Description: RVT_N Location: 88-334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-757 bp Feature: gene Location: 1481-1777 bp Feature: gene Location: 1812-2174 bp Feature: domain Description: PemK_toxin Location: 1836-2139 bp Feature: domain Description: PemK_toxin Location: 1836-2139 bp Feature: gene Location: 19350-20204 bp Feature: domain Description: xerC Location: 19416-20178 bp Feature: domain Description: xerC Location: 19416-20178 bp Feature: gene Location: 20349-20891 bp Feature: gene Location: 20786-21712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20810-21062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20810-21062 bp Feature: domain Description: McrA Location: 21296-21638 bp Feature: domain Description: McrA Location: 21296-21638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PemK_toxin (pfam02452), xerC (PRK01287), McrA (COG4058)

Seq: PVWO01000042.1 Chamaesiphon polymorphus CCALA 037 NODE_99_length_21561_cov_5.0068_ID_63463, whole genome shotgun sequence (21561 bp)
Overview 1 RT 1: 18184-21484 bp Neighborhood of RT #1 [18184, 21507] DUF4336 IlvE RVT-GII McrA Feature: gene Location: 18184-19416 bp Feature: domain Description: DUF4336 Location: 18316-19300 bp Feature: domain Description: DUF4336 Location: 18316-19300 bp Feature: gene Location: 19599-20459 bp Feature: domain Description: IlvE Location: 19608-20451 bp Feature: domain Description: IlvE Location: 19608-20451 bp Feature: gene Location: 20620-21507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20647-20914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20647-20914 bp Feature: domain Description: McrA Location: 21154-21484 bp Feature: domain Description: McrA Location: 21154-21484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4336 (pfam14234), IlvE (COG0115), RVT-GII, McrA (COG4058)