myRT

myRT report for GCA_003003915.1_ASM300391v1

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Seq: PVWE01000160.1 Filamentous cyanobacterium CCP1 NODE_1205_length_5028_cov_3.2957_ID_102449, whole genome shotgun sequence (5028 bp)
Overview 1 RT 1: 1-4815 bp Neighborhood of RT #1 [1, 5027] RVT-CRISPR-like RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core HemolysinCabind HemolysinCabind Feature: gene Location: 1-765 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 355-766 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 355-766 bp Feature: gene Location: 867-5027 bp Feature: domain Description: RHS_repeat Location: 1191-1275 bp Feature: domain Description: RHS_repeat Location: 1 1 91 -1 275 bp Feature: domain Description: RHS_repeat Location: 1368-1455 bp Feature: domain Description: RHS_repeat Location: 1 368-1 455 bp Feature: domain Description: RHS_repeat Location: 1560-1659 bp Feature: domain Description: RHS_repeat Location: 1 560-1 659 bp Feature: domain Description: RHS_repeat Location: 1683-1797 bp Feature: domain Description: RHS_repeat Location: 1 683-1 797 bp Feature: domain Description: RHS_repeat Location: 1875-1962 bp Feature: domain Description: RHS_repeat Location: 1 875-1 962 bp Feature: domain Description: RHS_repeat Location: 2058-2148 bp Feature: domain Description: RHS_repeat Location: 2058-21 48 bp Feature: domain Description: RHS_repeat Location: 2250-2340 bp Feature: domain Description: RHS_repeat Location: 2250-2340 bp Feature: domain Description: RHS_repeat Location: 2391-2475 bp Feature: domain Description: RHS_repeat Location: 2391 -2475 bp Feature: domain Description: RHS_repeat Location: 2523-2562 bp Feature: domain Description: RHS_repeat Location: 2523-2562 bp Feature: domain Description: RHS_repeat Location: 2640-2742 bp Feature: domain Description: RHS_repeat Location: 2640-2742 bp Feature: domain Description: Rhs_assc_core Location: 3015-3249 bp Feature: domain Description: Rhs_assc_core Location: 301 5-3249 bp Feature: domain Description: HemolysinCabind Location: 4608-4710 bp Feature: domain Description: HemolysinCabind Location: 4608-471 0 bp Feature: domain Description: HemolysinCabind Location: 4716-4815 bp Feature: domain Description: HemolysinCabind Location: 471 6-481 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696), HemolysinCabind (pfam00353)

Seq: PVWE01000224.1 Filamentous cyanobacterium CCP1 NODE_1411_length_4528_cov_3.07549_ID_109933, whole genome shotgun sequence (4528 bp)
Overview 1 RT 1: 1676-4464 bp Neighborhood of RT #1 [1676, 4526] DDE_Tnp_1_6 RVT-GII Feature: gene Location: 1676-2854 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2411-2783 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2 411-2 783 bp Feature: gene Location: 3166-3447 bp Feature: gene Location: 3453-4526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3780-4464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3780-4464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), RVT-GII

Seq: PVWE01000864.1 Filamentous cyanobacterium CCP1 NODE_3137_length_2468_cov_2.15893_ID_160639, whole genome shotgun sequence (2468 bp)
Overview 1 RT 1: 662-2389 bp Neighborhood of RT #1 [662, 2466] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Feature: gene Location: 662-937 bp Feature: domain Description: Cas2_I_II_III Location: 671-899 bp Feature: domain Description: Cas2_I_II_III Location: 671-899 bp Feature: gene Location: 940-2223 bp Feature: domain Description: Cas1_I-II-III Location: 1147-2185 bp Feature: domain Description: Cas1_I-II-III Location: 1147-2185 bp Feature: gene Location: 2224-2466 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2227-2389 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2227-23 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR

Seq: PVWE01000928.1 Filamentous cyanobacterium CCP1 NODE_3323_length_2355_cov_47.1967_ID_513884, whole genome shotgun sequence (2355 bp)
Overview 1 RT 1: 607-2251 bp Neighborhood of RT #1 [607, 2265] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 607-2265 bp Feature: domain Description: RVT_N Location: 643-889 bp Feature: domain Description: RVT_N Location: 64 3-889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937-1576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937-1576 bp Feature: domain Description: GIIM Note: maturase Location: 1657-1888 bp Feature: domain Description: GIIM Note: maturase Location: 1657-1888 bp Feature: domain Description: HNHc Note: nucleases Location: 2095-2251 bp Feature: domain Description: HNHc Note: nucleases Location: 2095-2251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PVWE01000045.1 Filamentous cyanobacterium CCP1 NODE_690_length_7252_cov_3.36084_ID_86328, whole genome shotgun sequence (7252 bp)
Overview 1 RT 1: 3-4154 bp Neighborhood of RT #1 [3, 4195] RVT_N RVT-GII GIIM HNHc InsE PHA02517 Feature: gene Location: 3-128 bp Feature: gene Location: 248-517 bp Feature: gene Location: 1020-2690 bp Feature: domain Description: RVT_N Location: 1050-1296 bp Feature: domain Description: RVT_N Location: 105 0-1296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1344-2004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1344-2004 bp Feature: domain Description: GIIM Note: maturase Location: 2094-2310 bp Feature: domain Description: GIIM Note: maturase Location: 2094-2310 bp Feature: domain Description: HNHc Note: nucleases Location: 2526-2676 bp Feature: domain Description: HNHc Note: nucleases Location: 25 26-2676 bp Feature: gene Location: 3039-3344 bp Feature: domain Description: InsE Location: 3045-3318 bp Feature: domain Description: InsE Location: 3045 -3318 bp Feature: gene Location: 3341-4195 bp Feature: domain Description: PHA02517 Location: 3443-4154 bp Feature: domain Description: PHA025 17 Location: 3443-415 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)