myRT

myRT report for GCA_003003995.1_ASM300399v1

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Seq: PVWF01000091.1 Pleurocapsa sp. CCALA 161 NODE_123_length_19124_cov_9.74542_ID_61442, whole genome shotgun sequence (19124 bp)
Overview 1 RT 1: 15101-16747 bp Neighborhood of RT #1 [15101, 16794] 5-nucleotidase RVT-GII COG5659 Feature: gene Location: 15101-15277 bp Feature: domain Description: 5-nucleotidase Location: 15107-15257 bp Feature: domain Description: 5-nucleotidase Location: 1 51 07-1 5257 bp Feature: gene Location: 15420-15554 bp Feature: gene Location: 15567-15791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15570-15783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5570-1 5783 bp Feature: gene Location: 16116-16292 bp Feature: gene Location: 16582-16794 bp Feature: domain Description: COG5659 Location: 16612-16747 bp Feature: domain Description: COG5659 Location: 1 661 2-1 6747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5-nucleotidase (pfam06189), RVT-GII, COG5659 (SRSO17 transposase )

Seq: PVWF01000246.1 Pleurocapsa sp. CCALA 161 NODE_1506_length_2199_cov_42.0636_ID_461176, whole genome shotgun sequence (2199 bp)
Overview 1 RT 1: 259-2083 bp Neighborhood of RT #1 [259, 2112] RVT_N RVT-GII GIIM McrA Feature: gene Location: 259-396 bp Feature: gene Location: 595-2112 bp Feature: domain Description: RVT_N Location: 625-871 bp Feature: domain Description: RVT_N Location: 62 5-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1516 bp Feature: domain Description: GIIM Note: maturase Location: 1576-1765 bp Feature: domain Description: GIIM Note: maturase Location: 1576-1765 bp Feature: domain Description: McrA Location: 1765-2083 bp Feature: domain Description: McrA Location: 1765-2 083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: PVWF01000003.1 Pleurocapsa sp. CCALA 161 NODE_5_length_106552_cov_11.0284_ID_48257, whole genome shotgun sequence (106552 bp)
Overview 1 RT 1: 20379-25247 bp Neighborhood of RT #1 [20379, 25249] PRK10714 RVT-UNC abortive_AbiA MDR6 Uma2 Feature: gene Location: 20379-21380 bp Feature: domain Description: PRK10714 Location: 20445-21375 bp Feature: domain Description: PRK10714 Location: 20445-213 75 bp Feature: gene Location: 21547-21693 bp Feature: gene Location: 22028-23605 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 22172-22649 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 22172-22649 bp Feature: domain Description: abortive_AbiA Location: 23213-23573 bp Feature: domain Description: abortive_AbiA Location: 23 213 -23 573 bp Feature: gene Location: 23665-24660 bp Feature: domain Description: MDR6 Location: 23668-24649 bp Feature: domain Description: MDR6 Location: 23 668-24649 bp Feature: gene Location: 24677-25249 bp Feature: domain Description: Uma2 Location: 24713-25247 bp Feature: domain Description: Uma2 Location: 24713 -25247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10714 (undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional), RVT-UG17/RVT-GII/RVT-DGRs/RVT-Retrons(RVT-UNC), abortive_AbiA (TIGR04499), MDR6 (cd08272), Uma2 (pfam05685)