myRT

myRT report for GCA_003004605.1_ASM300460v1

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Seq: PVXI01000001.1 Photobacterium damselae subsp. damselae strain 206317-1 Contig_000001, whole genome shotgun sequence (2187 bp)
Overview 1 RT 1: 230-1850 bp Neighborhood of RT #1 [230, 2074] RVT_N RVT-GII GIIM Feature: gene Location: 230-361 bp Feature: gene Location: 560-2074 bp Feature: domain Description: RVT_N Location: 650-893 bp Feature: domain Description: RVT_N Location: 650-893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1 565 bp Feature: domain Description: GIIM Note: maturase Location: 1622-1850 bp Feature: domain Description: GIIM Note: maturase Location: 1 622-1 850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PVXI01000058.1 Photobacterium damselae subsp. damselae strain 206317-1 Contig_000058, whole genome shotgun sequence (21501 bp)
Overview 1 RT 1: 5982-13540 bp Neighborhood of RT #1 [5982, 13575] GltP RVT-GII GIIM PRK09564 TcyP Feature: gene Location: 5982-6851 bp Feature: gene Location: 7074-8390 bp Feature: domain Description: GltP Location: 7089-8307 bp Feature: domain Description: GltP Location: 7089-8307 bp Feature: gene Location: 9501-10745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9651-10266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9651-102 66 bp Feature: domain Description: GIIM Note: maturase Location: 10317-10518 bp Feature: domain Description: GIIM Note: maturase Location: 10317-10518 bp Feature: gene Location: 10782-12149 bp Feature: domain Description: PRK09564 Location: 10824-12147 bp Feature: domain Description: PRK09564 Location: 1082 4-12 147 bp Feature: gene Location: 12175-13575 bp Feature: domain Description: TcyP Location: 12178-13540 bp Feature: domain Description: TcyP Location: 12 178-13540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GltP (COG1301), RVT-GII, GIIM (pfam08388), PRK09564 (coenzyme A disulfide reductase; Reviewed), TcyP (COG1823)

Seq: PVXI01000071.1 Photobacterium damselae subsp. damselae strain 206317-1 Contig_000071, whole genome shotgun sequence (114282 bp)
Overview 1 RT 1: 34215-40971 bp Neighborhood of RT #1 [34215, 40991] lyz_P1 RVT-UG1 phage_xxxx phage_xxxx PRK07952 Feature: gene Location: 34215-34757 bp Feature: domain Description: lyz_P1 Location: 34308-34737 bp Feature: domain Description: lyz_P1 Location: 3 43 08-3 473 7 bp Feature: gene Location: 35130-35594 bp Feature: gene Location: 35669-39553 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 36314-36830 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3 63 14-3 683 0 bp Feature: gene Location: 39682-40269 bp Feature: domain Description: phage_xxxx Location: 39688-39898 bp Feature: domain Description: phage_xxxx Location: 3 9688-3 9898 bp Feature: domain Description: phage_xxxx Location: 39982-40249 bp Feature: domain Description: phage_xxxx Location: 3 9982-40249 bp Feature: gene Location: 40266-40991 bp Feature: domain Description: PRK07952 Location: 40269-40971 bp Feature: domain Description: PRK07952 Location: 40269-40971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lyz_P1 (cd16901), RVT-UG1, phage_xxxx (TIGR02642), PRK07952 (DNA replication protein DnaC; Validated)

Seq: PVXI01000118.1 Photobacterium damselae subsp. damselae strain 206317-1 Contig_000118, whole genome shotgun sequence (6298 bp)
Overview 1 RT 1: 32-2503 bp Neighborhood of RT #1 [32, 2538] PHA02517 RVT-GII DEDD_Tnp_IS110 Feature: gene Location: 32-352 bp Feature: domain Description: PHA02517 Location: 68-335 bp Feature: domain Description: PHA02517 Location: 68-335 bp Feature: gene Location: 594-791 bp Feature: gene Location: 973-1263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120-1255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120-1255 bp Feature: gene Location: 1449-1772 bp Feature: gene Location: 2239-2538 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2293-2503 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2293-2503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, DEDD_Tnp_IS110 (pfam01548)

Seq: PVXI01000158.1 Photobacterium damselae subsp. damselae strain 206317-1 Contig_000158, whole genome shotgun sequence (14993 bp)
Overview 1 RT 1: 5136-13666 bp Neighborhood of RT #1 [5136, 13683] PRK01202 PRK05367 RVT-UG15 HATPase_c_3 HSDR_N_2 INT_RitA_C_like Feature: gene Location: 5136-5519 bp Feature: domain Description: PRK01202 Location: 5142-5508 bp Feature: domain Description: PRK01202 Location: 5 142-5 5 08 bp Feature: gene Location: 5640-8513 bp Feature: domain Description: PRK05367 Location: 5664-8508 bp Feature: domain Description: PRK05 367 Location: 5 664-85 08 bp Feature: gene Location: 8987-10585 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 9398-9803 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 9398-9803 bp Feature: gene Location: 10730-12736 bp Feature: domain Description: HATPase_c_3 Location: 10796-11114 bp Feature: domain Description: HATPase_c_3 Location: 10796-11114 bp Feature: domain Description: HSDR_N_2 Location: 12248-12425 bp Feature: domain Description: HSDR_N_2 Location: 12248-12425 bp Feature: gene Location: 13087-13683 bp Feature: domain Description: INT_RitA_C_like Location: 13132-13666 bp Feature: domain Description: INT_RitA_C_like Location: 13132-13666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01202 (glycine cleavage system protein GcvH), PRK05367 (aminomethyl-transferring glycine dehydrogenase), RVT-UG15, HATPase_c_3 (pfam13589), HSDR_N_2 (pfam13588), INT_RitA_C_like (cd01188)