myRT

myRT report for GCA_003004645.1_ASM300464v1

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Seq: PVOS01000006.1 Escherichia coli strain BA13882 NODE_104_length_2272_cov_52.8302_ID_207, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PVOS01000042.1 Escherichia coli strain BA13882 NODE_10_length_129009_cov_23.5671_ID_19, whole genome shotgun sequence (129009 bp)
Overview 1 RT 1: 3-4180 bp Neighborhood of RT #1 [3, 4335] DDE_Tnp_1_assoc RVT-GII GIIM RVT-GII GT_2_WfgS_like Feature: gene Location: 3-317 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 24-285 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2 4-2 85 bp Feature: gene Location: 524-1153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 530-764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 530-764 bp Feature: domain Description: GIIM Note: maturase Location: 854-1061 bp Feature: domain Description: GIIM Note: maturase Location: 854-1061 bp Feature: gene Location: 1135-2022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1588-1954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1588-1954 bp Feature: gene Location: 2382-3248 bp Feature: gene Location: 3592-4335 bp Feature: domain Description: GT_2_WfgS_like Location: 3598-4180 bp Feature: domain Description: GT_2 _WfgS_like Location: 3598-4180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388), GT_2_WfgS_like (cd06433)

Seq: PVOS01000007.1 Escherichia coli strain BA13882 NODE_3_length_247485_cov_28.9553_ID_5, whole genome shotgun sequence (247485 bp)
Overview 1 RT 1: 32235-38302 bp Neighborhood of RT #1 [32235, 38322] PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Feature: gene Location: 32235-32387 bp Feature: gene Location: 32662-33840 bp Feature: domain Description: PRK09692 Location: 32668-33826 bp Feature: domain Description: PRK09692 Location: 3 2668-3 3 826 bp Feature: gene Location: 33842-35038 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 34127-34589 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3 4127-3 4589 bp Feature: gene Location: 35042-37045 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 35537-35984 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3 553 7-3 5984 bp Feature: gene Location: 37494-37766 bp Feature: domain Description: PRK09678 Location: 37503-37671 bp Feature: domain Description: PRK09678 Location: 3 7503 -3 7671 bp Feature: gene Location: 37768-38322 bp Feature: domain Description: Psu Location: 37792-38302 bp Feature: domain Description: Psu Location: 3 7792-3 83 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: PVOS01000113.1 Escherichia coli strain BA13882 NODE_97_length_2663_cov_84.8842_ID_193, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 270-2420 bp Neighborhood of RT #1 [270, 2515] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 270-479 bp Feature: gene Location: 614-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-24 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)