myRT

myRT report for GCA_003007755.1_ASM300775v1

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Seq: PVOV01000085.1 Escherichia coli strain BA29965 NODE_39_length_43064_cov_40.1909_ID_77, whole genome shotgun sequence (43064 bp)
Overview 1 RT 1: 2-1398 bp 2 RT 2: 36863-39828 bp Neighborhood of RT #1 [2, 1472] HTH_Tnp_1 RVT-GII RVT-GII IS285 Neighborhood of RT #2 [36863, 42395] HEPN_Apea GerD RVT-UG1 Feature: gene Location: 2-130 bp Feature: domain Description: HTH_Tnp_1 Location: 11-128 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 -1 28 bp Feature: gene Location: 169-372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 4-370 bp Feature: gene Location: 406-642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-589 bp Feature: gene Location: 700-837 bp Feature: gene Location: 990-1472 bp Feature: domain Description: IS285 Location: 1020-1398 bp Feature: domain Description: IS285 Location: 1 020-1 398 bp Feature: gene Location: 36863-37966 bp Feature: domain Description: HEPN_Apea Location: 36935-37250 bp Feature: domain Description: HEPN_Apea Location: 36935-37250 bp Feature: gene Location: 38263-38697 bp Feature: domain Description: GerD Location: 38341-38455 bp Feature: domain Description: GerD Location: 38341 -38455 bp Feature: gene Location: 38706-42395 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 39318-39828 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3931 8-39828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, IS285 (COG3328), HEPN_Apea (pfam18739), GerD (pfam17898), RVT-UG1

Seq: PVOV01000106.1 Escherichia coli strain BA29965 NODE_93_length_2663_cov_145.352_ID_185, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 149-1955 bp Neighborhood of RT #1 [149, 2050] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 149-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-12 47 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PVOV01000107.1 Escherichia coli strain BA29965 NODE_94_length_2545_cov_188.347_ID_187, whole genome shotgun sequence (2545 bp)
Overview 1 RT 1: 1-2428 bp Neighborhood of RT #1 [1, 2463] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-222 bp Feature: gene Location: 796-2463 bp Feature: domain Description: RVT_N Location: 844-1081 bp Feature: domain Description: RVT_N Location: 844-1081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132-1774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 2-1774 bp Feature: domain Description: GIIM Note: maturase Location: 1825-2059 bp Feature: domain Description: GIIM Note: maturase Location: 1825-2059 bp Feature: domain Description: HNHc Note: nucleases Location: 2269-2428 bp Feature: domain Description: HNHc Note: nucleases Location: 2269-2428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)