myRT

myRT report for GCA_003007765.1_ASM300776v1

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Seq: PVOT01001295.1 Escherichia coli strain BV723 NODE_191_length_7536_cov_15.6208_ID_381, whole genome shotgun sequence (7536 bp)
Overview 1 RT 1: 270-3453 bp Neighborhood of RT #1 [270, 3458] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 270-479 bp Feature: gene Location: 614-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 -1 71 2 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: Intron_maturas2 Location: 1 826-2084 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: gene Location: 2710-3162 bp Feature: domain Description: PRK13732 Location: 2716-3160 bp Feature: domain Description: PRK1 3732 Location: 271 6-31 60 bp Feature: gene Location: 3225-3458 bp Feature: domain Description: DUF905 Location: 3255-3453 bp Feature: domain Description: DUF905 Location: 3255-3453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PVOT01001309.1 Escherichia coli strain BV723 NODE_292_length_5318_cov_29.4198_ID_583, whole genome shotgun sequence (5318 bp)
Overview 1 RT 1: 1442-5090 bp Neighborhood of RT #1 [1442, 5317] PRK10597 SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 1442-1690 bp Feature: domain Description: PRK10597 Location: 1445-1685 bp Feature: domain Description: PRK10597 Location: 1445-1685 bp Feature: gene Location: 1913-2464 bp Feature: domain Description: SLATT_5 Location: 1919-2435 bp Feature: domain Description: SLATT_5 Location: 1919-2 435 bp Feature: gene Location: 2442-3812 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2670-3276 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 670-32 76 bp Feature: gene Location: 3893-4225 bp Feature: gene Location: 4250-5317 bp Feature: domain Description: Peptidase_S74 Location: 4943-5090 bp Feature: domain Description: Peptidase_S74 Location: 4943-5090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)

Seq: PVOT01001333.1 Escherichia coli strain BV723 NODE_482_length_2800_cov_25.1477_ID_963, whole genome shotgun sequence (2800 bp)
Overview 1 RT 1: 2-2794 bp Neighborhood of RT #1 [2, 2799] slmA RVT-Retrons pyrE rph Feature: gene Location: 2-166 bp Feature: domain Description: slmA Location: 5-152 bp Feature: domain Description: slmA Location: 5-152 bp Feature: gene Location: 212-1171 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 347-896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 47-896 bp Feature: gene Location: 1469-2125 bp Feature: domain Description: pyrE Location: 1487-2120 bp Feature: domain Description: pyrE Location: 1487-2120 bp Feature: gene Location: 2176-2799 bp Feature: domain Description: rph Location: 2179-2794 bp Feature: domain Description: rph Location: 2179-2794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PVOT01001338.1 Escherichia coli strain BV723 NODE_511_length_2566_cov_83.259_ID_1021, whole genome shotgun sequence (2566 bp)
Overview 1 RT 1: 83-2563 bp Neighborhood of RT #1 [83, 2563] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1750 bp Feature: domain Description: RVT_N Location: 131-368 bp Feature: domain Description: RVT_N Location: 131-368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 19-1061 bp Feature: domain Description: GIIM Note: maturase Location: 1112-1346 bp Feature: domain Description: GIIM Note: maturase Location: 1112-134 6 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: gene Location: 2030-2212 bp Feature: gene Location: 2324-2563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PVOT01000087.1 Escherichia coli strain BV723 NODE_676_length_1669_cov_19.2592_ID_1351, whole genome shotgun sequence (1669 bp)
Overview 1 RT 1: 135-1235 bp Neighborhood of RT #1 [135, 1480] RVT-GII RVT-GII GIIM Feature: gene Location: 135-305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231-300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231-300 bp Feature: gene Location: 305-1480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308-962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308-962 bp Feature: domain Description: GIIM Note: maturase Location: 1037-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1037-1235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)