myRT

myRT report for GCA_003007875.1_ASM300787v1

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Seq: PVOY01000125.1 Escherichia coli strain B24823 NODE_117_length_2344_cov_511.163_ID_233, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 83-2212 bp Neighborhood of RT #1 [83, 2212] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1750 bp Feature: domain Description: RVT_N Location: 131-368 bp Feature: domain Description: RVT_N Location: 1 31 -368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 9-1 061 bp Feature: domain Description: GIIM Note: maturase Location: 1112-1346 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 2-1 346 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: domain Description: HNHc Note: nucleases Location: 1 556-1 71 5 bp Feature: gene Location: 2030-2212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PVOY01000050.1 Escherichia coli strain B24823 NODE_74_length_9025_cov_77.1207_ID_147, whole genome shotgun sequence (9025 bp)
Overview 1 RT 1: 2182-8425 bp Neighborhood of RT #1 [2182, 8562] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 2182-2448 bp Feature: domain Description: Phage_integrase Location: 2248-2344 bp Feature: domain Description: Phage_integrase Location: 2 2 48-2 344 bp Feature: gene Location: 2531-3001 bp Feature: gene Location: 3348-6557 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3876-4365 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3876-4365 bp Feature: domain Description: nitrilase Location: 5871-6468 bp Feature: domain Description: nitrilase Location: 5871-6468 bp Feature: gene Location: 6852-7655 bp Feature: domain Description: AbiEi_3_N Location: 6885-7146 bp Feature: domain Description: AbiEi_3_N Location: 6885-7146 bp Feature: domain Description: AbiEi_3 Location: 7158-7614 bp Feature: domain Description: AbiEi_3 Location: 7158-7614 bp Feature: gene Location: 7642-8562 bp Feature: domain Description: AbiEii Location: 7684-8425 bp Feature: domain Description: AbiEii Location: 7684-842 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)