myRT

myRT report for GCA_003007895.1_ASM300789v1

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Seq: PVOZ01000001.1 Escherichia coli strain BA14434 NODE_123_length_2272_cov_145.888_ID_245, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PVOZ01000077.1 Escherichia coli strain BA14434 NODE_29_length_57913_cov_57.3839_ID_57, whole genome shotgun sequence (57913 bp)
Overview 1 RT 1: 5656-9947 bp Neighborhood of RT #1 [5656, 9947] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 5656-6918 bp Feature: domain Description: YesM Location: 6169-6910 bp Feature: domain Description: YesM Location: 6169-6910 bp Feature: gene Location: 6948-7118 bp Feature: gene Location: 7468-7989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7474-7756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7474-7756 bp Feature: domain Description: GIIM Note: maturase Location: 7804-7984 bp Feature: domain Description: GIIM Note: maturase Location: 7804-7984 bp Feature: gene Location: 8017-8556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8347-8425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8347-842 5 bp Feature: gene Location: 8587-8784 bp Feature: gene Location: 9042-9947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: PVOZ01000101.1 Escherichia coli strain BA14434 NODE_88_length_5959_cov_59.2162_ID_175, whole genome shotgun sequence (5959 bp)
Overview 1 RT 1: 195-3589 bp Neighborhood of RT #1 [195, 3687] RVT_N RVT-GII GIIM HNHc AdoMet_MTases Feature: gene Location: 195-521 bp Feature: gene Location: 633-815 bp Feature: gene Location: 1095-2762 bp Feature: domain Description: RVT_N Location: 1143-1380 bp Feature: domain Description: RVT_N Location: 1143 -13 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1431-2073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 1-2073 bp Feature: domain Description: GIIM Note: maturase Location: 2124-2358 bp Feature: domain Description: GIIM Note: maturase Location: 2124-23 58 bp Feature: domain Description: HNHc Note: nucleases Location: 2568-2727 bp Feature: domain Description: HNHc Note: nucleases Location: 2568-2727 bp Feature: gene Location: 2877-3098 bp Feature: gene Location: 3124-3687 bp Feature: domain Description: AdoMet_MTases Location: 3286-3589 bp Feature: domain Description: AdoMet_MTases Location: 3 286-3 589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173)

Seq: PVOZ01000004.1 Escherichia coli strain BA14434 NODE_8_length_156396_cov_44.5753_ID_15, whole genome shotgun sequence (156396 bp)
Overview 1 RT 1: 22320-28563 bp Neighborhood of RT #1 [22320, 28700] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22320-22586 bp Feature: domain Description: Phage_integrase Location: 22386-22482 bp Feature: domain Description: Phage_integrase Location: 22386-224 82 bp Feature: gene Location: 22669-23139 bp Feature: gene Location: 23486-26695 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24014-24503 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24 014 -24 503 bp Feature: domain Description: nitrilase Location: 26009-26606 bp Feature: domain Description: nitrilase Location: 26009-26606 bp Feature: gene Location: 26990-27793 bp Feature: domain Description: AbiEi_3_N Location: 27023-27284 bp Feature: domain Description: AbiEi_3_N Location: 27023-27284 bp Feature: domain Description: AbiEi_3 Location: 27296-27752 bp Feature: domain Description: AbiEi_3 Location: 27296-27752 bp Feature: gene Location: 27780-28700 bp Feature: domain Description: AbiEii Location: 27822-28563 bp Feature: domain Description: AbiEii Location: 27822-28563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)