myRT

myRT report for GCA_003007915.1_ASM300791v1

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Seq: PVPA01000003.1 Escherichia coli strain BA34774 NODE_123_length_2272_cov_147.261_ID_245, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PVPA01000049.1 Escherichia coli strain BA34774 NODE_36_length_49503_cov_57.0007_ID_71, whole genome shotgun sequence (49503 bp)
Overview 1 RT 1: 25584-29867 bp Neighborhood of RT #1 [25584, 29875] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 25584-26489 bp Feature: gene Location: 26747-26944 bp Feature: gene Location: 26975-27514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27305-27383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7305-2 7383 bp Feature: gene Location: 27542-28063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27548-27830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7548-2 7830 bp Feature: domain Description: GIIM Note: maturase Location: 27878-28058 bp Feature: domain Description: GIIM Note: maturase Location: 2 7878-2 8058 bp Feature: gene Location: 28385-28573 bp Feature: gene Location: 28613-29875 bp Feature: domain Description: YesM Location: 29126-29867 bp Feature: domain Description: YesM Location: 2 912 6-2 9867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: PVPA01000004.1 Escherichia coli strain BA34774 NODE_4_length_162914_cov_44.79_ID_7, whole genome shotgun sequence (162914 bp)
Overview 1 RT 1: 28838-35081 bp Neighborhood of RT #1 [28838, 35218] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28838-29104 bp Feature: domain Description: Phage_integrase Location: 28904-29000 bp Feature: domain Description: Phage_integrase Location: 28904-29000 bp Feature: gene Location: 29187-29657 bp Feature: gene Location: 30004-33213 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30532-31021 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 053 2-3 1021 bp Feature: domain Description: nitrilase Location: 32527-33124 bp Feature: domain Description: nitrilase Location: 3 2527-3 3 124 bp Feature: gene Location: 33508-34311 bp Feature: domain Description: AbiEi_3_N Location: 33541-33802 bp Feature: domain Description: AbiEi_3 _N Location: 3 3 541-3 3 802 bp Feature: domain Description: AbiEi_3 Location: 33814-34270 bp Feature: domain Description: AbiEi_3 Location: 3 3 814-3 4270 bp Feature: gene Location: 34298-35218 bp Feature: domain Description: AbiEii Location: 34340-35081 bp Feature: domain Description: AbiEii Location: 3 43 40-3 5081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: PVPA01000100.1 Escherichia coli strain BA34774 NODE_86_length_7287_cov_95.6188_ID_171, whole genome shotgun sequence (7287 bp)
Overview 1 RT 1: 3141-7051 bp Neighborhood of RT #1 [3141, 7053] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 3141-3416 bp Feature: gene Location: 3528-3710 bp Feature: gene Location: 3990-5657 bp Feature: domain Description: RVT_N Location: 4038-4275 bp Feature: domain Description: RVT_N Location: 4 038-4 275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4326-4968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 326-4 968 bp Feature: domain Description: GIIM Note: maturase Location: 5019-5253 bp Feature: domain Description: GIIM Note: maturase Location: 5019-5253 bp Feature: domain Description: HNHc Note: nucleases Location: 5463-5622 bp Feature: domain Description: HNHc Note: nucleases Location: 54 63-5622 bp Feature: gene Location: 6159-6581 bp Feature: domain Description: DUF1380 Location: 6162-6459 bp Feature: domain Description: DUF1380 Location: 6162-64 59 bp Feature: gene Location: 6628-7053 bp Feature: domain Description: Antirestrict Location: 6763-7051 bp Feature: domain Description: Antirestrict Location: 6763-7051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)

Seq: PVPA01000107.1 Escherichia coli strain BA34774 NODE_95_length_4867_cov_41.5015_ID_189, whole genome shotgun sequence (4867 bp)
Overview 1 RT 1: 685-4011 bp Neighborhood of RT #1 [685, 4011] HTH_XRE RVT-Retrons FRG Feature: gene Location: 685-1077 bp Feature: gene Location: 1114-1434 bp Feature: domain Description: HTH_XRE Location: 1129-1288 bp Feature: domain Description: HTH_XRE Location: 1129-1288 bp Feature: gene Location: 1400-2350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1580-2123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15 80-2123 bp Feature: gene Location: 2459-3823 bp Feature: domain Description: FRG Location: 3026-3311 bp Feature: domain Description: FRG Location: 3026-3311 bp Feature: gene Location: 3862-4011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)