myRT

myRT report for GCA_003007935.1_ASM300793v1

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Seq: PVPB01000120.1 Escherichia coli strain BP3354 NODE_104_length_4307_cov_61.6157_ID_207, whole genome shotgun sequence (4307 bp)
Overview 1 RT 1: 685-4011 bp Neighborhood of RT #1 [685, 4011] HTH_XRE RVT-Retrons FRG Feature: gene Location: 685-1077 bp Feature: gene Location: 1114-1434 bp Feature: domain Description: HTH_XRE Location: 1129-1288 bp Feature: domain Description: HTH_XRE Location: 1 1 29-1 288 bp Feature: gene Location: 1400-2350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1580-2123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 580-21 23 bp Feature: gene Location: 2459-3823 bp Feature: domain Description: FRG Location: 3026-3311 bp Feature: domain Description: FRG Location: 3026-331 1 bp Feature: gene Location: 3862-4011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)

Seq: PVPB01000054.1 Escherichia coli strain BP3354 NODE_35_length_47400_cov_94.1766_ID_69, whole genome shotgun sequence (47400 bp)
Overview 1 RT 1: 18828-23111 bp Neighborhood of RT #1 [18828, 23119] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 18828-19733 bp Feature: gene Location: 19991-20188 bp Feature: gene Location: 20219-20758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20549-20627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0549-2 062 7 bp Feature: gene Location: 20786-21307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20792-21074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0792 -2 1074 bp Feature: domain Description: GIIM Note: maturase Location: 21122-21302 bp Feature: domain Description: GIIM Note: maturase Location: 2 112 2 -2 1302 bp Feature: gene Location: 21629-21817 bp Feature: gene Location: 21857-23119 bp Feature: domain Description: YesM Location: 22370-23111 bp Feature: domain Description: YesM Location: 2 2 370-2 3111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: PVPB01000098.1 Escherichia coli strain BP3354 NODE_58_length_21987_cov_124.948_ID_115, whole genome shotgun sequence (21987 bp)
Overview 1 RT 1: 15596-20060 bp Neighborhood of RT #1 [15596, 20060] DUF3560 AdoMet_MTases RVT_N RVT-GII GIIM HNHc Feature: gene Location: 15596-16957 bp Feature: domain Description: DUF3560 Location: 15863-16220 bp Feature: domain Description: DUF3 560 Location: 15863 -16220 bp Feature: gene Location: 17005-17568 bp Feature: domain Description: AdoMet_MTases Location: 17167-17470 bp Feature: domain Description: AdoMet_MTases Location: 17167-17470 bp Feature: gene Location: 17931-19598 bp Feature: domain Description: RVT_N Location: 17979-18216 bp Feature: domain Description: RVT_N Location: 17979-18216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18267-18909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18267-18909 bp Feature: domain Description: GIIM Note: maturase Location: 18960-19194 bp Feature: domain Description: GIIM Note: maturase Location: 18960-19194 bp Feature: domain Description: HNHc Note: nucleases Location: 19404-19563 bp Feature: domain Description: HNHc Note: nucleases Location: 19404-19563 bp Feature: gene Location: 19635-19781 bp Feature: gene Location: 19878-20060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), AdoMet_MTases (cl17173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PVPB01000003.1 Escherichia coli strain BP3354 NODE_79_length_8823_cov_93.4993_ID_157, whole genome shotgun sequence (8823 bp)
Overview 1 RT 1: 5265-8376 bp Neighborhood of RT #1 [5265, 8621] PHA02517 RVT-GII GIIM Feature: gene Location: 5265-6089 bp Feature: gene Location: 6216-6506 bp Feature: domain Description: PHA02517 Location: 6222-6441 bp Feature: domain Description: PHA02517 Location: 6222-64 4 1 bp Feature: gene Location: 7098-8621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7371-8103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7371-8103 bp Feature: domain Description: GIIM Note: maturase Location: 8178-8376 bp Feature: domain Description: GIIM Note: maturase Location: 8178-8376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PVPB01000004.1 Escherichia coli strain BP3354 NODE_8_length_156398_cov_70.3437_ID_15, whole genome shotgun sequence (156398 bp)
Overview 1 RT 1: 22319-28562 bp Neighborhood of RT #1 [22319, 28699] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22319-22585 bp Feature: domain Description: Phage_integrase Location: 22385-22481 bp Feature: domain Description: Phage_integrase Location: 22385 -22481 bp Feature: gene Location: 22668-23138 bp Feature: gene Location: 23485-26694 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24013-24502 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24013-245 02 bp Feature: domain Description: nitrilase Location: 26008-26605 bp Feature: domain Description: nitrilase Location: 26008-26605 bp Feature: gene Location: 26989-27792 bp Feature: domain Description: AbiEi_3_N Location: 27022-27283 bp Feature: domain Description: AbiEi_3_N Location: 27022-27283 bp Feature: domain Description: AbiEi_3 Location: 27295-27751 bp Feature: domain Description: AbiEi_3 Location: 27295 -2775 1 bp Feature: gene Location: 27779-28699 bp Feature: domain Description: AbiEii Location: 27821-28562 bp Feature: domain Description: AbiEii Location: 27821-285 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)