myRT

myRT report for GCA_003007965.1_ASM300796v1

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Seq: PVPC01000005.1 Escherichia coli strain B6770 NODE_16_length_88126_cov_39.1507_ID_31, whole genome shotgun sequence (88126 bp)
Overview 1 RT 1: 27348-33591 bp Neighborhood of RT #1 [27348, 33728] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 27348-27614 bp Feature: domain Description: Phage_integrase Location: 27414-27510 bp Feature: domain Description: Phage_integrase Location: 2741 4-2751 0 bp Feature: gene Location: 27697-28167 bp Feature: gene Location: 28514-31723 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29042-29531 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29042-29531 bp Feature: domain Description: nitrilase Location: 31037-31634 bp Feature: domain Description: nitrilase Location: 31 037-31 634 bp Feature: gene Location: 32018-32821 bp Feature: domain Description: AbiEi_3_N Location: 32051-32312 bp Feature: domain Description: AbiEi_3_N Location: 32051 -3231 2 bp Feature: domain Description: AbiEi_3 Location: 32324-32780 bp Feature: domain Description: AbiEi_3 Location: 32324-32780 bp Feature: gene Location: 32808-33728 bp Feature: domain Description: AbiEii Location: 32850-33591 bp Feature: domain Description: AbiEii Location: 32850-33591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: PVPC01000065.1 Escherichia coli strain B6770 NODE_3_length_229082_cov_42.5978_ID_5, whole genome shotgun sequence (229082 bp)
Overview 1 RT 1: 217057-221340 bp Neighborhood of RT #1 [217057, 221348] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 217057-217962 bp Feature: gene Location: 218100-218291 bp Feature: gene Location: 218448-218987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218778-218856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 18778-2 18856 bp Feature: gene Location: 219015-219536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219021-219303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1902 1-2 19303 bp Feature: domain Description: GIIM Note: maturase Location: 219351-219531 bp Feature: domain Description: GIIM Note: maturase Location: 2 19351-2 19531 bp Feature: gene Location: 219858-220046 bp Feature: gene Location: 220086-221348 bp Feature: domain Description: YesM Location: 220599-221340 bp Feature: domain Description: YesM Location: 2 2 0599-2 2 1340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: PVPC01000003.1 Escherichia coli strain B6770 NODE_95_length_7359_cov_77.0452_ID_189, whole genome shotgun sequence (7359 bp)
Overview 1 RT 1: 3-4009 bp Neighborhood of RT #1 [3, 4047] PHA02517 RVT-GII GIIM PHA02517 PRK10339 PBP1_sucrose_transcription_regulator Feature: gene Location: 3-164 bp Feature: domain Description: PHA02517 Location: 6-99 bp Feature: domain Description: PHA02517 Location: 6-99 bp Feature: gene Location: 756-2279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1761 bp Feature: domain Description: GIIM Note: maturase Location: 1836-2034 bp Feature: domain Description: GIIM Note: maturase Location: 183 6-203 4 bp Feature: gene Location: 2397-2843 bp Feature: domain Description: PHA02517 Location: 2400-2838 bp Feature: domain Description: PHA02517 Location: 2400-283 8 bp Feature: gene Location: 2896-4047 bp Feature: domain Description: PRK10339 Location: 3034-3175 bp Feature: domain Description: PRK103 3 9 Location: 3 03 4-3 175 bp Feature: domain Description: PBP1_sucrose_transcription_regulator Location: 3208-4009 bp Feature: domain Description: PBP1_sucrose_transcription_regulator Location: 3 208-4009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10339 (DNA-binding transcriptional repressor EbgR; Provisional), PBP1_sucrose_transcription_regulator (cd06288)