myRT

myRT report for GCA_003008015.1_ASM300801v1

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Seq: PVPH01000044.1 Escherichia coli strain B25762 NODE_13_length_110634_cov_47.3196_ID_25, whole genome shotgun sequence (110634 bp)
Overview 1 RT 1: 49354-53237 bp Neighborhood of RT #1 [49354, 53242] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49354-49812 bp Feature: domain Description: dut Location: 49360-49807 bp Feature: domain Description: dut Location: 49360-49807 bp Feature: gene Location: 49919-50515 bp Feature: domain Description: slmA Location: 49925-50501 bp Feature: domain Description: slmA Location: 49925-50501 bp Feature: gene Location: 50561-51520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50696-51245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50696-51 245 bp Feature: gene Location: 51818-52474 bp Feature: domain Description: pyrE Location: 51836-52469 bp Feature: domain Description: pyrE Location: 51 836-52469 bp Feature: gene Location: 52526-53242 bp Feature: domain Description: rph Location: 52529-53237 bp Feature: domain Description: rph Location: 52529-53237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PVPH01000004.1 Escherichia coli strain B25762 NODE_30_length_51501_cov_41.7263_ID_59, whole genome shotgun sequence (51501 bp)
Overview 1 RT 1: 39932-43977 bp Neighborhood of RT #1 [39932, 44042] QdoI PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 39932-40282 bp Feature: domain Description: QdoI Location: 39998-40250 bp Feature: domain Description: QdoI Location: 39998-402 50 bp Feature: gene Location: 40885-41331 bp Feature: domain Description: PHA02517 Location: 40888-41329 bp Feature: domain Description: PHA02 517 Location: 40888-4132 9 bp Feature: gene Location: 41448-42971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41721-42453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172 1-42 453 bp Feature: domain Description: GIIM Note: maturase Location: 42528-42726 bp Feature: domain Description: GIIM Note: maturase Location: 42 52 8-42 72 6 bp Feature: gene Location: 42925-43350 bp Feature: gene Location: 43563-44042 bp Feature: domain Description: PHA02517 Location: 43623-43977 bp Feature: domain Description: PHA02 517 Location: 4362 3-43977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QdoI (COG1917), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PVPH01000053.1 Escherichia coli strain B25762 NODE_44_length_20490_cov_23.4348_ID_87, whole genome shotgun sequence (20490 bp)
Overview 1 RT 1: 10140-14835 bp Neighborhood of RT #1 [10140, 14835] PRK10276 RVT-GII Intron_maturas2 HNHc PRK13704 Feature: gene Location: 10140-10559 bp Feature: domain Description: PRK10276 Location: 10179-10545 bp Feature: domain Description: PRK10276 Location: 10179-10545 bp Feature: gene Location: 10573-10782 bp Feature: gene Location: 10917-12818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11184-12015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11184-12015 bp Feature: domain Description: Intron_maturas2 Location: 12129-12387 bp Feature: domain Description: Intron_maturas2 Location: 12129-123 87 bp Feature: domain Description: HNHc Note: nucleases Location: 12561-12723 bp Feature: domain Description: HNHc Note: nucleases Location: 12561-12723 bp Feature: gene Location: 13046-14242 bp Feature: domain Description: PRK13704 Location: 13889-14234 bp Feature: domain Description: PRK13 704 Location: 13 889-1423 4 bp Feature: gene Location: 14239-14835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13704 (plasmid SOS inhibition protein A; Provisional)

Seq: PVPH01000052.1 Escherichia coli strain B25762 NODE_45_length_20184_cov_48.1818_ID_89, whole genome shotgun sequence (20184 bp)
Overview 1 RT 1: 1112-3623 bp Neighborhood of RT #1 [1112, 3623] RVT-UG17 SLATT_5 Feature: gene Location: 1112-1249 bp Feature: gene Location: 1265-1399 bp Feature: gene Location: 1507-2877 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1735-2341 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1735-234 1 bp Feature: gene Location: 2855-3406 bp Feature: domain Description: SLATT_5 Location: 2861-3377 bp Feature: domain Description: SLATT_5 Location: 2861-3377 bp Feature: gene Location: 3444-3623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: PVPH01000058.1 Escherichia coli strain B25762 NODE_48_length_16266_cov_27.7232_ID_95, whole genome shotgun sequence (16266 bp)
Overview 1 RT 1: 12210-16122 bp Neighborhood of RT #1 [12210, 16122] Antirestrict DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 12210-12635 bp Feature: domain Description: Antirestrict Location: 12345-12633 bp Feature: domain Description: Antirestrict Location: 12345 -12633 bp Feature: gene Location: 12682-13104 bp Feature: domain Description: DUF1380 Location: 12685-12982 bp Feature: domain Description: DUF1380 Location: 12685 -12982 bp Feature: gene Location: 13606-15273 bp Feature: domain Description: RVT_N Location: 13654-13891 bp Feature: domain Description: RVT_N Location: 1365 4-13891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13942-14584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13942-145 84 bp Feature: domain Description: GIIM Note: maturase Location: 14635-14869 bp Feature: domain Description: GIIM Note: maturase Location: 14635 -14869 bp Feature: domain Description: HNHc Note: nucleases Location: 15079-15238 bp Feature: domain Description: HNHc Note: nucleases Location: 15 079-15 238 bp Feature: gene Location: 15553-15735 bp Feature: gene Location: 15847-16122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)