myRT

myRT report for GCA_003008025.1_ASM300802v1

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Seq: PVPL01000053.1 Escherichia coli strain B12243 NODE_22_length_75259_cov_74.3113_ID_43, whole genome shotgun sequence (75259 bp)
Overview 1 RT 1: 49354-53237 bp Neighborhood of RT #1 [49354, 53242] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49354-49812 bp Feature: domain Description: dut Location: 49360-49807 bp Feature: domain Description: dut Location: 49360-49807 bp Feature: gene Location: 49919-50515 bp Feature: domain Description: slmA Location: 49925-50501 bp Feature: domain Description: slmA Location: 49925-50501 bp Feature: gene Location: 50561-51520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50696-51245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50696-51 245 bp Feature: gene Location: 51818-52474 bp Feature: domain Description: pyrE Location: 51836-52469 bp Feature: domain Description: pyrE Location: 51 836-52469 bp Feature: gene Location: 52526-53242 bp Feature: domain Description: rph Location: 52529-53237 bp Feature: domain Description: rph Location: 52529-53237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PVPL01000034.1 Escherichia coli strain B12243 NODE_2_length_277257_cov_46.6506_ID_3, whole genome shotgun sequence (277257 bp)
Overview 1 RT 1: 23334-29055 bp Neighborhood of RT #1 [23334, 29063] TagH Wzt_C-like TagG RVT_N RVT-GII GIIM HNHc PRK15414 Feature: gene Location: 23334-24548 bp Feature: domain Description: TagH Location: 23343-24072 bp Feature: domain Description: TagH Location: 2 3343-2 4072 bp Feature: domain Description: Wzt_C-like Location: 24111-24534 bp Feature: domain Description: Wzt_C-like Location: 2 4111-2 4534 bp Feature: gene Location: 24548-25342 bp Feature: domain Description: TagG Location: 24563-25337 bp Feature: domain Description: TagG Location: 2 4563-2 5337 bp Feature: gene Location: 25506-27173 bp Feature: domain Description: RVT_N Location: 25554-25791 bp Feature: domain Description: RVT_N Location: 2 5554-2 5791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25842-26484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5842 -2 6484 bp Feature: domain Description: GIIM Note: maturase Location: 26535-26769 bp Feature: domain Description: GIIM Note: maturase Location: 2 6535-2 6769 bp Feature: domain Description: HNHc Note: nucleases Location: 26979-27138 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6979-2 7138 bp Feature: gene Location: 27453-27635 bp Feature: gene Location: 27747-29063 bp Feature: domain Description: PRK15414 Location: 27750-29055 bp Feature: domain Description: PRK15414 Location: 2 7750-2 9055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TagH (COG1134), Wzt_C-like (cl15685), TagG (COG1682), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK15414 (phosphomannomutase)

Seq: PVPL01000041.1 Escherichia coli strain B12243 NODE_8_length_194533_cov_62.2192_ID_15, whole genome shotgun sequence (194533 bp)
Overview 1 RT 1: 166309-170592 bp Neighborhood of RT #1 [166309, 170600] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 166309-167214 bp Feature: gene Location: 167352-167543 bp Feature: gene Location: 167700-168239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168030-168108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16803 0-168108 bp Feature: gene Location: 168267-168788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168273-168555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168273 -168555 bp Feature: domain Description: GIIM Note: maturase Location: 168603-168783 bp Feature: domain Description: GIIM Note: maturase Location: 168603 -168783 bp Feature: gene Location: 169110-169298 bp Feature: gene Location: 169338-170600 bp Feature: domain Description: YesM Location: 169851-170592 bp Feature: domain Description: YesM Location: 169851-170592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)