myRT

myRT report for GCA_003008075.1_ASM300807v1

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Seq: PVPO01000005.1 Escherichia coli strain BA31599 NODE_101_length_2271_cov_199.392_ID_201, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 1-1934 bp Neighborhood of RT #1 [1, 2179] RVT-GII RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-1004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-999 bp Feature: gene Location: 1004-2179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 007-1 661 bp Feature: domain Description: GIIM Note: maturase Location: 1736-1934 bp Feature: domain Description: GIIM Note: maturase Location: 1 736-1 934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PVPO01000055.1 Escherichia coli strain BA31599 NODE_10_length_126936_cov_40.3209_ID_19, whole genome shotgun sequence (126936 bp)
Overview 1 RT 1: 98414-102697 bp Neighborhood of RT #1 [98414, 102705] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 98414-99319 bp Feature: gene Location: 99457-99648 bp Feature: gene Location: 99805-100344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100135-100213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100135-1002 13 bp Feature: gene Location: 100372-100893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100378-100660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100378-100660 bp Feature: domain Description: GIIM Note: maturase Location: 100708-100888 bp Feature: domain Description: GIIM Note: maturase Location: 100708-100888 bp Feature: gene Location: 101215-101403 bp Feature: gene Location: 101443-102705 bp Feature: domain Description: YesM Location: 101956-102697 bp Feature: domain Description: YesM Location: 101956-102 697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: PVPO01000083.1 Escherichia coli strain BA31599 NODE_21_length_77344_cov_40.5628_ID_41, whole genome shotgun sequence (77344 bp)
Overview 1 RT 1: 73321-76407 bp Neighborhood of RT #1 [73321, 76448] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 73321-73470 bp Feature: gene Location: 73771-74757 bp Feature: gene Location: 74759-75691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74861-75455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74861-75455 bp Feature: gene Location: 75717-75962 bp Feature: gene Location: 76146-76448 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76155-76407 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76155-76407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: PVPO01000006.1 Escherichia coli strain BA31599 NODE_22_length_76774_cov_26.7962_ID_43, whole genome shotgun sequence (76774 bp)
Overview 1 RT 1: 5700-12152 bp Neighborhood of RT #1 [5700, 12152] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 5700-5951 bp Feature: gene Location: 5981-6817 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 6470-6641 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 64 70-664 1 bp Feature: gene Location: 7473-8573 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7656-8184 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7656-8184 bp Feature: gene Location: 8688-10934 bp Feature: domain Description: AAA_15 Location: 8691-9699 bp Feature: domain Description: AAA_15 Location: 8691-9699 bp Feature: gene Location: 11847-12152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)