myRT

myRT report for GCA_003008085.1_ASM300808v1

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Seq: PVPJ01000071.1 Escherichia coli strain BV643 NODE_18_length_83104_cov_45.0638_ID_35, whole genome shotgun sequence (83104 bp)
Overview 1 RT 1: 3580-7288 bp Neighborhood of RT #1 [3580, 7290] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3580-3786 bp Feature: gene Location: 4120-4329 bp Feature: gene Location: 4464-6365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4731-5562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4731 -5562 bp Feature: domain Description: Intron_maturas2 Location: 5676-5934 bp Feature: domain Description: Intron_maturas2 Location: 5676-5934 bp Feature: domain Description: HNHc Note: nucleases Location: 6108-6270 bp Feature: domain Description: HNHc Note: nucleases Location: 61 08-6270 bp Feature: gene Location: 6560-7000 bp Feature: domain Description: PRK13732 Location: 6566-6998 bp Feature: domain Description: PRK1 3732 Location: 6566-6998 bp Feature: gene Location: 7054-7290 bp Feature: domain Description: DUF905 Location: 7087-7288 bp Feature: domain Description: DUF905 Location: 7087-7288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PVPJ01000058.1 Escherichia coli strain BV643 NODE_34_length_47423_cov_55.4316_ID_67, whole genome shotgun sequence (47423 bp)
Overview 1 RT 1: 21399-25282 bp Neighborhood of RT #1 [21399, 25287] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 21399-21857 bp Feature: domain Description: dut Location: 21405-21852 bp Feature: domain Description: dut Location: 2 1405-2 1852 bp Feature: gene Location: 21964-22560 bp Feature: domain Description: slmA Location: 21970-22546 bp Feature: domain Description: slmA Location: 2 1970-2 2 546 bp Feature: gene Location: 22606-23565 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22741-23290 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 741-2 32 90 bp Feature: gene Location: 23863-24519 bp Feature: domain Description: pyrE Location: 23881-24514 bp Feature: domain Description: pyrE Location: 2 3881-2 4514 bp Feature: gene Location: 24571-25287 bp Feature: domain Description: rph Location: 24574-25282 bp Feature: domain Description: rph Location: 2 4574-2 52 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PVPJ01000069.1 Escherichia coli strain BV643 NODE_7_length_187906_cov_50.1894_ID_13, whole genome shotgun sequence (187906 bp)
Overview 1 RT 1: 14319-17771 bp Neighborhood of RT #1 [14319, 17771] PHA02517 RVT-GII GIIM Feature: gene Location: 14319-14591 bp Feature: gene Location: 14659-15099 bp Feature: domain Description: PHA02517 Location: 14662-15064 bp Feature: domain Description: PHA02517 Location: 14662-15064 bp Feature: gene Location: 15228-16751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15501-16233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15501-1623 3 bp Feature: domain Description: GIIM Note: maturase Location: 16308-16506 bp Feature: domain Description: GIIM Note: maturase Location: 163 08-16506 bp Feature: gene Location: 17045-17416 bp Feature: gene Location: 17487-17771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)