myRT

myRT report for GCA_003008135.1_ASM300813v1

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Seq: PVPQ01000007.1 Escherichia coli strain B32512 NODE_115_length_1477_cov_214.258_ID_229, whole genome shotgun sequence (1477 bp)
Overview 1 RT 1: 3-1140 bp Neighborhood of RT #1 [3, 1385] RVT-GII GIIM Feature: gene Location: 3-1385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135-867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35-867 bp Feature: domain Description: GIIM Note: maturase Location: 942-1140 bp Feature: domain Description: GIIM Note: maturase Location: 942-1 1 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PVPQ01000085.1 Escherichia coli strain B32512 NODE_23_length_77297_cov_43.9148_ID_45, whole genome shotgun sequence (77297 bp)
Overview 1 RT 1: 73274-76360 bp Neighborhood of RT #1 [73274, 76401] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 73274-73423 bp Feature: gene Location: 73724-74710 bp Feature: gene Location: 74712-75644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74814-75408 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74814-75408 bp Feature: gene Location: 75670-75915 bp Feature: gene Location: 76099-76401 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76108-76360 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76108-76360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: PVPQ01000041.1 Escherichia coli strain B32512 NODE_48_length_31401_cov_32.8227_ID_95, whole genome shotgun sequence (31401 bp)
Overview 1 RT 1: 11216-17668 bp Neighborhood of RT #1 [11216, 17668] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 11216-11521 bp Feature: gene Location: 12404-14680 bp Feature: domain Description: AAA_15 Location: 12437-13445 bp Feature: domain Description: AAA_15 Location: 1243 7-13 445 bp Feature: gene Location: 14795-15895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14978-15506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14978-15506 bp Feature: gene Location: 16551-17387 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 17040-17211 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 17040-17211 bp Feature: gene Location: 17417-17668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: PVPQ01000103.1 Escherichia coli strain B32512 NODE_71_length_9277_cov_40.3796_ID_141, whole genome shotgun sequence (9277 bp)
Overview 1 RT 1: 138-4219 bp Neighborhood of RT #1 [138, 4224] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 138-308 bp Feature: gene Location: 331-834 bp Feature: gene Location: 1397-3298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664-2495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664 -24 95 bp Feature: domain Description: Intron_maturas2 Location: 2609-2867 bp Feature: domain Description: Intron_maturas2 Location: 2609-2867 bp Feature: domain Description: HNHc Note: nucleases Location: 3041-3203 bp Feature: domain Description: HNHc Note: nucleases Location: 304 1-3203 bp Feature: gene Location: 3493-3933 bp Feature: domain Description: PRK13732 Location: 3499-3931 bp Feature: domain Description: PRK13732 Location: 34 99-3931 bp Feature: gene Location: 3991-4224 bp Feature: domain Description: DUF905 Location: 4021-4219 bp Feature: domain Description: DUF905 Location: 4 021-4 219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PVPQ01000061.1 Escherichia coli strain B32512 NODE_7_length_176694_cov_42.3826_ID_13, whole genome shotgun sequence (176694 bp)
Overview 1 RT 1: 148470-152753 bp Neighborhood of RT #1 [148470, 152761] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 148470-149375 bp Feature: gene Location: 149513-149704 bp Feature: gene Location: 149861-150400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150191-150269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 0191-15 0269 bp Feature: gene Location: 150428-150949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150434-150716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 0434-15 0716 bp Feature: domain Description: GIIM Note: maturase Location: 150764-150944 bp Feature: domain Description: GIIM Note: maturase Location: 15 0764-15 0944 bp Feature: gene Location: 151271-151459 bp Feature: gene Location: 151499-152761 bp Feature: domain Description: YesM Location: 152012-152753 bp Feature: domain Description: YesM Location: 15 2012-15 275 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)