myRT

myRT report for GCA_003008195.1_ASM300819v1

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Seq: PVPT01000049.1 Escherichia coli strain BP1473 NODE_19_length_85796_cov_44.1841_ID_37, whole genome shotgun sequence (85796 bp)
Overview 1 RT 1: 6334-12801 bp Neighborhood of RT #1 [6334, 12801] PinE RVT-GII Feature: gene Location: 6334-6552 bp Feature: domain Description: PinE Location: 6337-6544 bp Feature: domain Description: PinE Location: 6337-6544 bp Feature: gene Location: 6587-6958 bp Feature: gene Location: 6844-8331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7249-7939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7249-7939 bp Feature: gene Location: 8382-8615 bp Feature: gene Location: 8764-12801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII

Seq: PVPT01000079.1 Escherichia coli strain BP1473 NODE_21_length_77288_cov_52.4921_ID_41, whole genome shotgun sequence (77288 bp)
Overview 1 RT 1: 73265-76351 bp Neighborhood of RT #1 [73265, 76392] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 73265-73414 bp Feature: gene Location: 73715-74701 bp Feature: gene Location: 74703-75635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74805-75399 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74805-75399 bp Feature: gene Location: 75661-75906 bp Feature: gene Location: 76090-76392 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76099-76351 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76099-76351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: PVPT01000055.1 Escherichia coli strain BP1473 NODE_6_length_176828_cov_51.6817_ID_11, whole genome shotgun sequence (176828 bp)
Overview 1 RT 1: 153122-157404 bp Neighborhood of RT #1 [153122, 157412] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 153122-154027 bp Feature: gene Location: 154164-154355 bp Feature: gene Location: 154512-155051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154842-154920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154842-154920 bp Feature: gene Location: 155079-155600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155085-155367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155085-1553 67 bp Feature: domain Description: GIIM Note: maturase Location: 155415-155595 bp Feature: domain Description: GIIM Note: maturase Location: 155415-155595 bp Feature: gene Location: 155922-156110 bp Feature: gene Location: 156150-157412 bp Feature: domain Description: YesM Location: 156663-157404 bp Feature: domain Description: YesM Location: 156663 -157404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: PVPT01000006.1 Escherichia coli strain BP1473 NODE_82_length_2272_cov_242.444_ID_163, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)