myRT

myRT report for GCA_003008245.1_ASM300824v1

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Seq: PVPG01000010.1 Escherichia coli strain BA9313 NODE_16_length_149955_cov_36.1604_ID_31, whole genome shotgun sequence (149955 bp)
Overview 1 RT 1: 78639-82508 bp 2 RT 2: 101495-104904 bp Neighborhood of RT #1 [78639, 82508] RVT-Retrons Neighborhood of RT #2 [101495, 104969] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 78639-78878 bp Feature: gene Location: 79185-79361 bp Feature: gene Location: 79434-81206 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79593-80211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79593-8021 1 bp Feature: gene Location: 81228-81395 bp Feature: gene Location: 81441-82508 bp Feature: gene Location: 101495-101665 bp Feature: gene Location: 101983-102399 bp Feature: domain Description: PHA02517 Location: 101986-102391 bp Feature: domain Description: PHA0251 7 Location: 1 01 986-1 02391 bp Feature: gene Location: 102522-104045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102795-103527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02795-1 03527 bp Feature: domain Description: GIIM Note: maturase Location: 103602-103800 bp Feature: domain Description: GIIM Note: maturase Location: 1 03602-1 03800 bp Feature: gene Location: 103999-104424 bp Feature: gene Location: 104637-104969 bp Feature: domain Description: PHA02517 Location: 104652-104904 bp Feature: domain Description: PHA0251 7 Location: 1 04652-1 04904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PVPG01000017.1 Escherichia coli strain BA9313 NODE_43_length_14906_cov_38.8874_ID_85, whole genome shotgun sequence (14906 bp)
Overview 1 RT 1: 7166-11039 bp Neighborhood of RT #1 [7166, 11410] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7166-7342 bp Feature: gene Location: 7750-8454 bp Feature: domain Description: SLATT_5 Location: 7912-8422 bp Feature: domain Description: SLATT_5 Location: 7912 -842 2 bp Feature: gene Location: 8432-9802 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8660-9266 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8660-92 66 bp Feature: gene Location: 9915-10499 bp Feature: domain Description: Caudo_TAP Location: 10131-10488 bp Feature: domain Description: Caudo_TAP Location: 10131-10488 bp Feature: gene Location: 10508-11410 bp Feature: domain Description: Macro_Appr_pase Location: 10526-11039 bp Feature: domain Description: Macro_Appr_pase Location: 1052 6-11039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: PVPG01000078.1 Escherichia coli strain BA9313 NODE_64_length_3788_cov_87.0846_ID_127, whole genome shotgun sequence (3788 bp)
Overview 1 RT 1: 169-3785 bp Neighborhood of RT #1 [169, 3787] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 169-444 bp Feature: gene Location: 556-738 bp Feature: gene Location: 1018-2685 bp Feature: domain Description: RVT_N Location: 1066-1303 bp Feature: domain Description: RVT_N Location: 1066-13 03 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1354-1996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 54-1996 bp Feature: domain Description: GIIM Note: maturase Location: 2047-2281 bp Feature: domain Description: GIIM Note: maturase Location: 2047-2281 bp Feature: domain Description: HNHc Note: nucleases Location: 2491-2650 bp Feature: domain Description: HNHc Note: nucleases Location: 2491-2650 bp Feature: gene Location: 3187-3609 bp Feature: domain Description: DUF1380 Location: 3190-3487 bp Feature: domain Description: DUF13 80 Location: 3 190-3 487 bp Feature: gene Location: 3656-3787 bp Feature: domain Description: Antirestrict Location: 3704-3785 bp Feature: domain Description: Antirestrict Location: 3 704-3 785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)