myRT

myRT report for GCA_003008275.1_ASM300827v1

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Seq: PVPI01000048.1 Escherichia coli strain B32065 NODE_21_length_75435_cov_59.0386_ID_41, whole genome shotgun sequence (75435 bp)
Overview 1 RT 1: 49354-53237 bp Neighborhood of RT #1 [49354, 53242] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49354-49812 bp Feature: domain Description: dut Location: 49360-49807 bp Feature: domain Description: dut Location: 49360-49807 bp Feature: gene Location: 49919-50515 bp Feature: domain Description: slmA Location: 49925-50501 bp Feature: domain Description: slmA Location: 49925-50501 bp Feature: gene Location: 50561-51520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50696-51245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50696-51 245 bp Feature: gene Location: 51818-52474 bp Feature: domain Description: pyrE Location: 51836-52469 bp Feature: domain Description: pyrE Location: 51 836-52469 bp Feature: gene Location: 52526-53242 bp Feature: domain Description: rph Location: 52529-53237 bp Feature: domain Description: rph Location: 52529-53237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PVPI01000063.1 Escherichia coli strain B32065 NODE_57_length_8283_cov_48.4273_ID_113, whole genome shotgun sequence (8283 bp)
Overview 1 RT 1: 477-4200 bp Neighborhood of RT #1 [477, 4205] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 477-683 bp Feature: gene Location: 1017-1226 bp Feature: gene Location: 1361-3262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1628-2459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 8-2 459 bp Feature: domain Description: Intron_maturas2 Location: 2573-2831 bp Feature: domain Description: Intron_maturas2 Location: 2 573-2 831 bp Feature: domain Description: HNHc Note: nucleases Location: 3005-3167 bp Feature: domain Description: HNHc Note: nucleases Location: 3005-3167 bp Feature: gene Location: 3457-3909 bp Feature: domain Description: PRK13732 Location: 3463-3907 bp Feature: domain Description: PRK13732 Location: 3463-3907 bp Feature: gene Location: 3972-4205 bp Feature: domain Description: DUF905 Location: 4002-4200 bp Feature: domain Description: DUF905 Location: 4002 -42 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: PVPI01000079.1 Escherichia coli strain B32065 NODE_76_length_2344_cov_268.273_ID_151, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 643 -880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 1-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)